FC920866

Overview
NameFC920866
Unique NameFC920866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB6_MOUSE (Tubulin beta-6 chain OS=Mus musculus GN=Tubb6 PE=1 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 7.559e-90
Identity = 161/204 (78.92%), Postives = 174/204 (85.29%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAEL+D  LDVVRKE E+CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDICFRTLKL TPT+GDLNHL+SATMSGVT  LRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLT+RGSQQYRALTVPELTQQM+DAKNMM A +PR
Sbjct:  103 KGHYTEGAELVDSVLDVVRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPR 306
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB6_BOVIN (Tubulin beta-6 chain OS=Bos taurus GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 7.559e-90
Identity = 161/204 (78.92%), Postives = 174/204 (85.29%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAEL+D  LDVVRKE E+CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDICFRTLKL TPT+GDLNHL+SATMSGVT  LRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLT+RGSQQYRALTVPELTQQM+DAKNMM A +PR
Sbjct:  103 KGHYTEGAELVDSVLDVVRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPR 306
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB5_CHICK (Tubulin beta-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 7.559e-90
Identity = 161/204 (78.92%), Postives = 174/204 (85.29%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAEL+D  LDVVRKE E+CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDICFRTLKL TPT+GDLNHL+SATMSGVT  LRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLT+RGSQQYRALTVPELTQQM+DAKNMM A +PR
Sbjct:  103 KGHYTEGAELVDSVLDVVRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPR 306
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB2_PHYPO (Tubulin beta-2 chain OS=Physarum polycephalum GN=BETC PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 1.684e-89
Identity = 154/204 (75.49%), Postives = 176/204 (86.27%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAEL++  +DVVRKEAENCDCLQGFQ+CH              ISKIREE+PDRMM TFSV PSPKVSDTVVEPYNATLS+HQLVENADE M +DNEALYDICFRTLKL TPT+GDLNHL+S  MSG+T CLRFPGQLNSDLRKLAVNLIPFPRLHFF++G+APLT+R +  +RALTVPELTQQ++D++NMM A++PR
Sbjct:  103 KGHYTEGAELVESVVDVVRKEAENCDCLQGFQICHSLGGGTGSGLGTLLISKIREEFPDRMMCTFSVMPSPKVSDTVVEPYNATLSIHQLVENADEVMCIDNEALYDICFRTLKLTTPTYGDLNHLVSGVMSGITACLRFPGQLNSDLRKLAVNLIPFPRLHFFLIGYAPLTARSAMGFRALTVPELTQQIFDSRNMMAASDPR 306
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB_SCHCO (Tubulin beta chain OS=Schizophyllum commune GN=TUB-2 PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.199e-89
Identity = 160/204 (78.43%), Postives = 174/204 (85.29%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAEL+D  LDVVRKEAE  DCLQGFQ+ H              ISKIREEYPDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVEN+DE   +DNEALYDICFRTLKL+TPT+GDLNHL+S  MSG+T  LRFPGQLNSDLRKLAVNL+PFPRLHFFM GFAPLT+RGSQQYRA+TVPELTQQM+DAKNMM A++PR
Sbjct:  103 KGHYTEGAELVDAVLDVVRKEAEGTDCLQGFQITHSLGGGTGAGMGTLLISKIREEYPDRMMCTFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLSTPTYGDLNHLVSFVMSGITTSLRFPGQLNSDLRKLAVNLVPFPRLHFFMTGFAPLTARGSQQYRAVTVPELTQQMFDAKNMMAASDPR 306
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB_ACHKL (Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.199e-89
Identity = 164/204 (80.39%), Postives = 174/204 (85.29%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAELID  LDVVRKEAE+CDCLQGFQ+ H              ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVENADE M LDNEALYDICFRTLKL  PT+GDLNHL+ A MSG+T  LRFPGQLNS L KLAVNLIPFPRLHFFM+GFAPLTSRGSQQYRALTVPELTQQ +DAKNMMCAA+PR
Sbjct:  102 KGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMCTYSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMCLDNEALYDICFRTLKLTNPTYGDLNHLVCAAMSGITTLLRFPGQLNSVL-KLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPR 304
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB6_HUMAN (Tubulin beta-6 chain OS=Homo sapiens GN=TUBB6 PE=1 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.199e-89
Identity = 160/204 (78.43%), Postives = 174/204 (85.29%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAEL+D  LDVVRKE E+CDCLQGFQ+ H              ISKIREE+PDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDICFRTLKL TPT+GDLNHL+SATMSGVT  LRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DA+NMM A +PR
Sbjct:  103 KGHYTEGAELVDAVLDVVRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDARNMMAACDPR 306
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB3_DROME (Tubulin beta-3 chain OS=Drosophila melanogaster GN=betaTub60D PE=1 SV=2)

HSP 1 Score: 328.176 bits (840), Expect = 2.199e-89
Identity = 158/204 (77.45%), Postives = 174/204 (85.29%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAEL+D  LDVVRKE ENCDCLQGFQ+ H              ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLS+HQLVEN DE   +DNEALYDICFRTLK++ P++GDLNHL+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM A +PR
Sbjct:  109 KGHYTEGAELVDNVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKVSNPSYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPR 312
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB1_ECHMU (Tubulin beta-1 chain OS=Echinococcus multilocularis GN=TUB-1 PE=3 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 3.752e-89
Identity = 156/204 (76.47%), Postives = 173/204 (84.80%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAEL++  LDV+RKE E+CDCLQGFQ+CH              ISK+REE+PDR+M TFSV PSPKVSDTVVEPYNATLS+HQLVEN DE   +DNEALYDICFRTLKL  PT+GDLNHL+SATMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYR LTV ELTQQM+DAKNMM A +PR
Sbjct:  103 KGHYTEGAELVESVLDVIRKECESCDCLQGFQMCHSLGGGTGSGMGTLLISKMREEFPDRIMNTFSVMPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRVLTVAELTQQMFDAKNMMAACDPR 306
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB1_SUIBO (Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 6.399e-89
Identity = 157/204 (76.96%), Postives = 174/204 (85.29%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAEL+D  LDVVRKEAE  DCLQGFQ+ H              +SKIREEYPDRMM T+SV PSP VSDTVVEPYNATLSVHQLVEN+DE   +DNEALYDICFRTLKL+TPT+GDLNHL+S  MSG+T CLRFPGQLNSDLRKLAVN++PFPRLHFFM GFAPLT+RGSQQYRA+TVPELTQQM+DAKNMM A++PR
Sbjct:  103 KGHYTEGAELVDSVLDVVRKEAEGTDCLQGFQITHSLGGGTGAGMGTLLMSKIREEYPDRMMCTYSVVPSPAVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLSTPTYGDLNHLVSFVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMTGFAPLTARGSQQYRAVTVPELTQQMFDAKNMMAASDPR 306
The following BLAST results are available for this feature:
BLAST of FC920866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBB6_MOUSE7.559e-9078.92Tubulin beta-6 chain OS=Mus musculus GN=Tubb6 PE=1... [more]
TBB6_BOVIN7.559e-9078.92Tubulin beta-6 chain OS=Bos taurus GN=TUBB6 PE=2 S... [more]
TBB5_CHICK7.559e-9078.92Tubulin beta-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBB2_PHYPO1.684e-8975.49Tubulin beta-2 chain OS=Physarum polycephalum GN=B... [more]
TBB_SCHCO2.199e-8978.43Tubulin beta chain OS=Schizophyllum commune GN=TUB... [more]
TBB_ACHKL2.199e-8980.39Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1[more]
TBB6_HUMAN2.199e-8978.43Tubulin beta-6 chain OS=Homo sapiens GN=TUBB6 PE=1... [more]
TBB3_DROME2.199e-8977.45Tubulin beta-3 chain OS=Drosophila melanogaster GN... [more]
TBB1_ECHMU3.752e-8976.47Tubulin beta-1 chain OS=Echinococcus multiloculari... [more]
TBB1_SUIBO6.399e-8976.96Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 P... [more]

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Properties
Property NameValue
Genbank descriptionC32014A06EF RVDevelop1 Citrus clementina cDNA clone C32014A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920866 ID=FC920866; Name=FC920866; organism=Citrus clementina; type=EST; length=634bp
CAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGATTTTCCTCTGGATG
TTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTA
TGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTAT
TTCCAAGATCAGGGAGGAGTATCCAGATCGCATGATGTTGACATTTTCCG
TCTTCCCGTCTCCTAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCT
ACCCTCTCAGTACATCAGCTTGTTGAGAATGCCGATGAATGTATGGTGCT
AGATAATGAAGCTCTATATGATATTTGCTTCAGAACTCTCAAGCTCGCCA
CCCCTACTTTTGGTGATCTTAACCATCTTATCTCTGCTACCATGAGTGGC
GTCACATGCTGTCTTCGATTCCCCGGACAGCTGAACTCTGACCTCAGGAA
GCTTGCTGTTAACCTTATCCCTTTCCCGCGTCTCCATTTCTTCATGGTTG
GGTTTGCACCCTTGACATCACGAGGATCACAGCAGTATCGTGCCCTTACT
GTGCCAGAACTAACCCAGCAGATGTGGGATGCTAAGAACATGATGTGTGC
TGCTGAACCACGCACGGTCGTTACCTAACTGCTT
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