FC920866

Overview
NameFC920866
Unique NameFC920866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA1A_HUMAN (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 82/204 (40.20%), Postives = 121/204 (59.31%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E+ID  LD +RK A+ C  LQGF V H              + ++  +Y  +  L FS++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LI   +S +T  LRF G LN DL +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  N M   +PR
Sbjct:  105 RGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA1A_CRIGR (Tubulin alpha-1A chain OS=Cricetulus griseus GN=TUBA1A PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 82/204 (40.20%), Postives = 121/204 (59.31%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E+ID  LD +RK A+ C  LQGF V H              + ++  +Y  +  L FS++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LI   +S +T  LRF G LN DL +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  N M   +PR
Sbjct:  105 RGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA_BOMMO (Tubulin alpha chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.307e-41
Identity = 80/204 (39.22%), Postives = 122/204 (59.80%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E++D  LD +RK A+ C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LI   +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S     +  L+V E+T   ++  N M   +PR
Sbjct:  105 RGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIEPPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA2_DROME (Tubulin alpha-2 chain OS=Drosophila melanogaster GN=alphaTub85E PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.307e-41
Identity = 82/204 (40.20%), Postives = 121/204 (59.31%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E++D  LD +RK A+ C  LQGF V H              + ++  +Y  +  L FS++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LI   +S +T  LRF G LN DL +   NL+P+PR+HF +  +AP+ S     +  LTV E+T   ++  N M   +PR
Sbjct:  105 RGHYTIGKEIVDVVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYMNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISVEKAYHEQLTVAEITNACFEPANQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA1_DROME (Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.307e-41
Identity = 80/204 (39.22%), Postives = 122/204 (59.80%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E++D  LD +RK A+ C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LI   +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S     +  L+V E+T   ++  N M   +PR
Sbjct:  105 RGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA1A_PIG (Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.307e-41
Identity = 82/204 (40.20%), Postives = 120/204 (58.82%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E+ID  LD +RK A+ C  LQGF V H              + ++  +Y  +  L FS++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LI   +S +T  LRF G LN DL +   NL+P+PR HF +  +AP+ S     +  L+V E+T   ++  N M   +PR
Sbjct:  105 RGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.708e-41
Identity = 81/204 (39.71%), Postives = 122/204 (59.80%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G ELID  LD +R+ A+NC  LQGF V H              + ++  +Y  +  L F V+P+P+ + +VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L L  P + +LN LI+  +S +T  LRF G LN DL +   NL+P+PR+HF +V ++P+ S     + A +V E+T   ++  N M   +PR
Sbjct:  105 RGHYTVGKELIDGVLDKIRRVADNCAGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQTATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGLERPNYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYSPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.230e-41
Identity = 81/204 (39.71%), Postives = 122/204 (59.80%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E++D  LD +RK A+NC  LQGF V H              + ++  +Y  +  L ++V+PSP+VS  VVEPYN+ LS H L+E+ D   +LDNEA+YD+    L +  PT+ +LN LI   +S +T  LRF G LN DL +   NL+P+PR+HF +  +AP+ S     +  L+V E++  +++  +MM   +PR
Sbjct:  105 RGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVYHAVGGGTGSGLGALLLERLSVDYGKKSKLGYTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAAMLDNEAIYDLTRANLDIERPTYTNLNRLIGQVVSALTASLRFDGALNVDLTEFQTNLVPYPRIHFVLTTYAPVISAEKAYHEQLSVSEISNAVFEPASMMTKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBAT_ONCMY (Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.230e-41
Identity = 80/204 (39.22%), Postives = 122/204 (59.80%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E++D  LD VRK ++ C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LI   +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S     +  L+V E+T   ++  N M   +PR
Sbjct:  105 RGHYTIGKEIVDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEMLSVAEITNACFEPANQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.230e-41
Identity = 80/203 (39.41%), Postives = 123/203 (60.59%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEP 610
            +GHYT G ELID  LD +RK+ ENC+ LQGF V H              + ++  E+  +  L FSV+P+P+VS +VVEPYN+ L+ H  +E +D   ++DNEA+YD+C + L +  P++ +LN LI+  +S +T  LRF G LN DL +   NL+P+PR+HF +  +AP+ S     +  L+V ++T   ++  N M   +P
Sbjct:  108 RGHYTIGKELIDVVLDRIRKQTENCEGLQGFLVFHSFGGGTGSGFSSLLMERLSVEFGKKSKLEFSVYPAPQVSTSVVEPYNSILTTHTTLELSDCSFMVDNEAIYDLCRQKLHVERPSYSNLNRLIAQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPVISADRAHHEPLSVQDITHMCFEKANQMVKCDP 310          
The following BLAST results are available for this feature:
BLAST of FC920866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBA1A_HUMAN1.001e-4140.20Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A P... [more]
TBA1A_CRIGR1.001e-4140.20Tubulin alpha-1A chain OS=Cricetulus griseus GN=TU... [more]
TBA_BOMMO1.307e-4139.22Tubulin alpha chain OS=Bombyx mori PE=2 SV=1[more]
TBA2_DROME1.307e-4140.20Tubulin alpha-2 chain OS=Drosophila melanogaster G... [more]
TBA1_DROME1.307e-4139.22Tubulin alpha-1 chain OS=Drosophila melanogaster G... [more]
TBA1A_PIG1.307e-4140.20Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=... [more]
TBA_GIBZE1.708e-4139.71Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]
TBA_TRYCR2.230e-4139.71Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1[more]
TBAT_ONCMY2.230e-4139.22Tubulin alpha chain, testis-specific OS=Oncorhynch... [more]
TBA8_CAEEL2.230e-4139.41Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32014A06EF RVDevelop1 Citrus clementina cDNA clone C32014A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920866 ID=FC920866; Name=FC920866; organism=Citrus clementina; type=EST; length=634bp
CAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGATTTTCCTCTGGATG
TTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTA
TGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTAT
TTCCAAGATCAGGGAGGAGTATCCAGATCGCATGATGTTGACATTTTCCG
TCTTCCCGTCTCCTAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCT
ACCCTCTCAGTACATCAGCTTGTTGAGAATGCCGATGAATGTATGGTGCT
AGATAATGAAGCTCTATATGATATTTGCTTCAGAACTCTCAAGCTCGCCA
CCCCTACTTTTGGTGATCTTAACCATCTTATCTCTGCTACCATGAGTGGC
GTCACATGCTGTCTTCGATTCCCCGGACAGCTGAACTCTGACCTCAGGAA
GCTTGCTGTTAACCTTATCCCTTTCCCGCGTCTCCATTTCTTCATGGTTG
GGTTTGCACCCTTGACATCACGAGGATCACAGCAGTATCGTGCCCTTACT
GTGCCAGAACTAACCCAGCAGATGTGGGATGCTAAGAACATGATGTGTGC
TGCTGAACCACGCACGGTCGTTACCTAACTGCTT
back to top