FC920866

Overview
NameFC920866
Unique NameFC920866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA5_CHICK (Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.230e-41
Identity = 82/204 (40.20%), Postives = 121/204 (59.31%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E+ID  LD +RK A+ C  LQGF   H              + ++  +Y  +  L FS++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  N M   +PR
Sbjct:  105 RGHYTIGKEIIDQVLDRIRKLADQCTGLQGFLCFHSFGGGTGSGFTSLLMERLSGDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNSCFEPANQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA4A_RAT (Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.230e-41
Identity = 82/204 (40.20%), Postives = 122/204 (59.80%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E+ID  LD +RK ++ C  LQGF V H              + ++  +Y  +  L FS++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  N M   +PR
Sbjct:  105 RGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA4A_MOUSE (Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.230e-41
Identity = 82/204 (40.20%), Postives = 122/204 (59.80%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E+ID  LD +RK ++ C  LQGF V H              + ++  +Y  +  L FS++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  N M   +PR
Sbjct:  105 RGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA4A_MACFA (Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.230e-41
Identity = 82/204 (40.20%), Postives = 122/204 (59.80%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E+ID  LD +RK ++ C  LQGF V H              + ++  +Y  +  L FS++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  N M   +PR
Sbjct:  105 RGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA4A_HUMAN (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.230e-41
Identity = 82/204 (40.20%), Postives = 122/204 (59.80%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E+ID  LD +RK ++ C  LQGF V H              + ++  +Y  +  L FS++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  N M   +PR
Sbjct:  105 RGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.230e-41
Identity = 82/204 (40.20%), Postives = 122/204 (59.80%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E+ID  LD +RK ++ C  LQGF V H              + ++  +Y  +  L FS++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  N M   +PR
Sbjct:  105 RGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA2_STYLE (Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.230e-41
Identity = 83/204 (40.69%), Postives = 124/204 (60.78%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E++D  LD +RK A+ C  LQGF V +              + ++  +Y  +  L F+++PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R L +  PT+ +LN LI+  +S +T  LRF G LN D+ +   NL+P+PR+H FM+  AP+ S     +  L+V E+T   ++  +MM   +PR
Sbjct:  105 RGHYTIGKEIVDLCLDGIRKLADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIH-FMLSSAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPR 307          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.230e-41
Identity = 79/204 (38.73%), Postives = 121/204 (59.31%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G + +D   D +RK A++C  LQGF + H              + ++  EY  +  L F+++P+P+ S  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LIS  +S +T  LRF G LN DL +   NL+PFPR+HF +V +AP+ S     +  L+V E+T   ++  N M   +P+
Sbjct:  102 RGHYTVGKDKVDMVSDRIRKLADSCSGLQGFLIFHSFGGGTGSGFTSLLMERLSVEYGKKSKLEFAIYPAPQASSAVVEPYNSVLTTHTTLEHSDCVFMVDNEAIYDICHRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPRIHFPLVTYAPIISSDRAYHEQLSVAEITSSCFEPNNQMVKCDPQ 305          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.913e-41
Identity = 81/204 (39.71%), Postives = 122/204 (59.80%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G ELID  LD VR  A+NC  LQGF V H              + ++  +Y  +  L F V+P+P+V+ +VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P + +LN LI+  +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S     + A +V E++   ++  + M   +PR
Sbjct:  105 RGHYTVGKELIDQVLDKVRHVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKCKLEFCVYPAPQVATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGIERPNYENLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVAYAPIVSAAKAAHEANSVQEISMSCFEPNSQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA1_APLCA (Tubulin alpha-1 chain OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.913e-41
Identity = 81/204 (39.71%), Postives = 121/204 (59.31%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G ELID  LD +RK A+ C  LQGF + H              + ++  +Y  +  L FSV+P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LI   +S +T  LRF G LN DL +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  N +   +PR
Sbjct:  105 RGHYTVGKELIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQLVKCDPR 308          
The following BLAST results are available for this feature:
BLAST of FC920866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBA5_CHICK2.230e-4140.20Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBA4A_RAT2.230e-4140.20Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tub... [more]
TBA4A_MOUSE2.230e-4140.20Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a P... [more]
TBA4A_MACFA2.230e-4140.20Tubulin alpha-4A chain OS=Macaca fascicularis GN=T... [more]
TBA4A_HUMAN2.230e-4140.20Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A P... [more]
TBA4A_BOVIN2.230e-4140.20Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=... [more]
TBA2_STYLE2.230e-4140.69Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA2_CHICK2.230e-4138.73Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA_MYCGR2.913e-4139.71Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]
TBA1_APLCA2.913e-4139.71Tubulin alpha-1 chain OS=Aplysia californica PE=2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32014A06EF RVDevelop1 Citrus clementina cDNA clone C32014A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920866 ID=FC920866; Name=FC920866; organism=Citrus clementina; type=EST; length=634bp
CAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGATTTTCCTCTGGATG
TTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTA
TGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTAT
TTCCAAGATCAGGGAGGAGTATCCAGATCGCATGATGTTGACATTTTCCG
TCTTCCCGTCTCCTAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCT
ACCCTCTCAGTACATCAGCTTGTTGAGAATGCCGATGAATGTATGGTGCT
AGATAATGAAGCTCTATATGATATTTGCTTCAGAACTCTCAAGCTCGCCA
CCCCTACTTTTGGTGATCTTAACCATCTTATCTCTGCTACCATGAGTGGC
GTCACATGCTGTCTTCGATTCCCCGGACAGCTGAACTCTGACCTCAGGAA
GCTTGCTGTTAACCTTATCCCTTTCCCGCGTCTCCATTTCTTCATGGTTG
GGTTTGCACCCTTGACATCACGAGGATCACAGCAGTATCGTGCCCTTACT
GTGCCAGAACTAACCCAGCAGATGTGGGATGCTAAGAACATGATGTGTGC
TGCTGAACCACGCACGGTCGTTACCTAACTGCTT
back to top