FC920866

Overview
NameFC920866
Unique NameFC920866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA8_RAT (Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba8 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.968e-41
Identity = 80/204 (39.22%), Postives = 121/204 (59.31%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E ID  LD +RK  + C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S     +  L+V E+T   ++  + M   +PR
Sbjct:  105 RGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIVSAEKAYHEQLSVAEITSSCFEPNSQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA_ENTDO (Tubulin alpha chain OS=Enteroctopus dofleini PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.489e-41
Identity = 81/204 (39.71%), Postives = 121/204 (59.31%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E ID  LD VRK ++ C  LQGF + H              + ++  +Y  +  L FS++P+P+V+  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S     +  L V E+T   ++  N M   +PR
Sbjct:  105 RGHYTIGKEHIDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKRNLDIERPSYTNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLAVAEVTSACFEPANQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA8_MOUSE (Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.489e-41
Identity = 80/204 (39.22%), Postives = 121/204 (59.31%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E ID  LD +RK  + C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S     +  L+V E+T   ++  + M   +PR
Sbjct:  105 RGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA8_HUMAN (Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.489e-41
Identity = 80/204 (39.22%), Postives = 121/204 (59.31%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E ID  LD +RK  + C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S     +  L+V E+T   ++  + M   +PR
Sbjct:  105 RGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA8_BOVIN (Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.489e-41
Identity = 80/204 (39.22%), Postives = 121/204 (59.31%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E ID  LD +RK  + C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S     +  L+V E+T   ++  + M   +PR
Sbjct:  105 RGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.489e-41
Identity = 80/203 (39.41%), Postives = 122/203 (60.10%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEP 610
            +GHYT G E++D   + +RK A+ CD LQGF   H              +  +  EY  +  L F+V+P+P++S +VVEPYN  L+ H  +E+AD   ++DNEA+YDIC R L ++ P+F +LN LI+  +S VT  LRF G LN DL +   NL+P+PR+HF +V +AP+ S+    + + +V E+T   ++  N M   +P
Sbjct:  106 RGHYTVGREIVDEVEERIRKMADQCDGLQGFLFTHSLGGGTGSGLGSLLLENLSYEYGKKSKLEFAVYPAPQLSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDICKRNLGISRPSFSNLNGLIAQVISSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYAPILSKKRATHESNSVSEITNACFEPGNQMVKCDP 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA3E_HUMAN (Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 6.489e-41
Identity = 79/204 (38.73%), Postives = 121/204 (59.31%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E++D  LD +RK A+ C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LI   +S +T  LRF G LN DL +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  N M   +PR
Sbjct:  105 RGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYSKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA1_HOMAM (Tubulin alpha-1 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.489e-41
Identity = 79/204 (38.73%), Postives = 122/204 (59.80%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E++D  LD +RK A+ C  LQGF + H              + ++  +Y  +  L F+V+P+P+V+  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LI   +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S     +  L+V E+T   ++  N M   +PR
Sbjct:  105 RGHYTIGKEIVDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA1_CHICK (Tubulin alpha-1 chain (Fragment) OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.489e-41
Identity = 81/204 (39.71%), Postives = 120/204 (58.82%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E+ID  LD +RK A+ C  LQGF V H              + ++  +Y  +  L FS++P+ +VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LI   +S +T  LRF G LN DL +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  N M   +PR
Sbjct:   66 RGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPARQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 269          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA_NOTVI (Tubulin alpha chain OS=Notophthalmus viridescens PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.475e-41
Identity = 81/204 (39.71%), Postives = 122/204 (59.80%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E+ID  LD +RK A+ C  LQGF V H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  N M   +PR
Sbjct:  105 RGHYTIGKEIIDQVLDRMRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 308          
The following BLAST results are available for this feature:
BLAST of FC920866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBA8_RAT4.968e-4139.22Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA_ENTDO6.489e-4139.71Tubulin alpha chain OS=Enteroctopus dofleini PE=2 ... [more]
TBA8_MOUSE6.489e-4139.22Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=... [more]
TBA8_HUMAN6.489e-4139.22Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=... [more]
TBA8_BOVIN6.489e-4139.22Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 ... [more]
TBA3_YEAST6.489e-4139.41Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]
TBA3E_HUMAN6.489e-4138.73Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E P... [more]
TBA1_HOMAM6.489e-4138.73Tubulin alpha-1 chain OS=Homarus americanus PE=2 S... [more]
TBA1_CHICK6.489e-4139.71Tubulin alpha-1 chain (Fragment) OS=Gallus gallus ... [more]
TBA_NOTVI8.475e-4139.71Tubulin alpha chain OS=Notophthalmus viridescens P... [more]

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Properties
Property NameValue
Genbank descriptionC32014A06EF RVDevelop1 Citrus clementina cDNA clone C32014A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920866 ID=FC920866; Name=FC920866; organism=Citrus clementina; type=EST; length=634bp
CAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGATTTTCCTCTGGATG
TTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTA
TGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTAT
TTCCAAGATCAGGGAGGAGTATCCAGATCGCATGATGTTGACATTTTCCG
TCTTCCCGTCTCCTAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCT
ACCCTCTCAGTACATCAGCTTGTTGAGAATGCCGATGAATGTATGGTGCT
AGATAATGAAGCTCTATATGATATTTGCTTCAGAACTCTCAAGCTCGCCA
CCCCTACTTTTGGTGATCTTAACCATCTTATCTCTGCTACCATGAGTGGC
GTCACATGCTGTCTTCGATTCCCCGGACAGCTGAACTCTGACCTCAGGAA
GCTTGCTGTTAACCTTATCCCTTTCCCGCGTCTCCATTTCTTCATGGTTG
GGTTTGCACCCTTGACATCACGAGGATCACAGCAGTATCGTGCCCTTACT
GTGCCAGAACTAACCCAGCAGATGTGGGATGCTAAGAACATGATGTGTGC
TGCTGAACCACGCACGGTCGTTACCTAACTGCTT
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