FC920866

Overview
NameFC920866
Unique NameFC920866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA4_DROME (Tubulin alpha-4 chain OS=Drosophila melanogaster GN=alphaTub67C PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.087e-39
Identity = 79/204 (38.73%), Postives = 118/204 (57.84%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +G Y+ G E+ID     ++K AE CD LQGF + H              + ++  +Y  +  L F+V+PSPKVS  VVEPYNA L+ H  ++++D   ++DNEA+YDIC  +L +  P + +LN LI+  +S  T  LRF G +N DL +   NL+PFPR+HF +V +APL S     +    +  LT   +++ NMM   +PR
Sbjct:  116 RGRYSIGKEVIDRVTSRLQKIAEQCDSLQGFLIFHSLGGGTGSGFTSLLVERLSTDYSKKCKLDFAVYPSPKVSTAVVEPYNALLTTHSTMDHSDCVFMVDNEAIYDICNNSLGVDRPAYRNLNRLIAQIVSSTTASLRFSGSMNVDLNEFQTNLVPFPRIHFPLVAYAPLMSAERSAHEQHAITTLTNACFESSNMMVKCDPR 319          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.726e-39
Identity = 79/204 (38.73%), Postives = 122/204 (59.80%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G ELID  +D +R+ A+NC   QG  V H              + ++  +Y  +  L F V+P+P++S +VVEPYN+ L+ H  +E++D   ++DNEA+YDIC + L +A P F +LN LI+  +S +T  LRF G LN DL +   NL+PFPR+HF +  +APL S   +Q+   +V E+T   +++ N M   + +
Sbjct:  103 RGHYTVGKELIDPVMDKLRRLADNCSGRQGLFVFHSFGGGTGSGFGALLLERLSTDYGKKAKLEFCVYPAPQLSSSVVEPYNSLLTTHTTLEHSDCSFMVDNEAIYDICKKNLGVAQPGFTNLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPFPRIHFPLASYAPLLSAPRRQHEQNSVEEMTFSCFESGNQMVKCDAK 306          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA2_HOMAM (Tubulin alpha-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.073e-39
Identity = 75/204 (36.76%), Postives = 120/204 (58.82%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E +D  LD +RK A+ C  LQGF +                + ++  EY  +  L  +++P+P+ + +VVEPYN+ L+ H  +E++D C ++DNEA++DIC R L ++ PT+ +LN LI   +S +T  LRF G LN DL +   NL+P+PR+HF +  ++P+ S     +  L+V E+T   ++  N M   +PR
Sbjct:  105 RGHYTIGKEYVDIVLDRIRKLADQCTGLQGFLIFRSFGGGTGSGFASLLMERLSVEYGKKSKLEIAIYPAPQSATSVVEPYNSILTTHTTLEHSDCCFMVDNEAIFDICQRNLDVSRPTYTNLNRLIGQIVSSITASLRFEGALNVDLTEFQTNLVPYPRIHFPLTTYSPIISAEKAYHEQLSVGEITSACFEPANQMVKCDPR 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.141e-38
Identity = 76/204 (37.25%), Postives = 116/204 (56.86%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +G Y+ G+E+I+  L+ +RK AE C  LQGF +                + ++  EY  ++ L FSV+PSP++S  VVEPYNA L+ H  +E +D   ++DNEALYDIC   L +  P++  +N LI+   S +T  LRF G LN DL +   NL+P+PR+HF +   AP+ S        L+V ++T   ++  N +   +PR
Sbjct:  112 RGRYSVGSEVIELVLERIRKLAEQCSGLQGFLIYRSFGGGTGSGFTSLLMERLSVEYCKKIKLEFSVYPSPRISTAVVEPYNAILTTHSTIEYSDCAFMVDNEALYDICQHKLGIGRPSYASINRLIAQVSSSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPITALAPIISAEKAYQEQLSVSDVTASCFEVSNQLVKCDPR 315          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 5.141e-38
Identity = 75/204 (36.76%), Postives = 115/204 (56.37%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +G Y+ G+E+ID  L+  RK AE C  LQGF +                + ++  EY  +  L FSV+P+P++S  VVEPYN+ L+ H   E+ D   ++DNEA+YDIC R L +  P+   +N L+   +S +T  LRF G LN DL +   NL+P+PR+HF M  FAP+ S     +   +V ++T   +++ N +   +PR
Sbjct:  112 RGRYSVGSEVIDLVLERTRKLAEQCGGLQGFLIFRSFGGGTGSGFTSLLMERLTGEYSRKTKLEFSVYPAPRISTAVVEPYNSVLTTHSTTEHTDCTFMVDNEAVYDICHRKLGVECPSHASINRLVVQVVSSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPMTAFAPIVSADKAYHEQFSVSDITTACFESSNQLVKCDPR 315          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.333e-37
Identity = 80/204 (39.22%), Postives = 117/204 (57.35%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E++D  LD +RK A+ C  LQGF V +              + ++  +Y  +  L F+V+PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R L +  PT+ +LN LI+  +S +T  LRF G LN D+ +   NL+P+P      V   P T      +  L+V E+T   ++  +MM   +PR
Sbjct:  105 RGHYTIGKEIVDLCLDRIRKLADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYP-----SVIIRPSTPAEKAYHEQLSVAEITNSAFEPASMMAKCDPR 303          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.388e-35
Identity = 75/205 (36.59%), Postives = 119/205 (58.05%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTC-CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +GHYT G E+ID  LD VR+ A+NC  LQGF V H              + ++  +Y  +  L F V+P+P+ + +VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ + N L++   S +T   L F   LN DL +   NL+P+PR+HF +  ++P+ S G   + + +V E+T   ++  N M   +PR
Sbjct:  105 RGHYTVGKEMIDQCLDKVRRVADNCSGLQGFLVFHSFGGGQGSGFGALLMERLSVDYGKKTKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDVQFMVDNEAIYDICRRNLGIERPSYENSNRLMAQGQSPITAIMLLFDCALNVDLNEFQTNLVPYPRIHFPLASYSPVVSAGKASHESNSVMEVTIVCFEPNNQMVKCDPR 309          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.119e-35
Identity = 70/183 (38.25%), Postives = 108/183 (59.02%), Query Frame = 2
Query:   65 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            A+ C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PT+ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S     +  L+V E+T   ++  N M   +PR
Sbjct:    1 ADACSGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICCRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISSERAYHEQLSVAEITSSCFEPNNQMVKCDPR 183          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.185e-34
Identity = 78/204 (38.24%), Postives = 118/204 (57.84%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAAEPRT 616
            Y +G +++D  +D+V +EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L+ PTF   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R     R  TV ++ +++   KN+M ++  RT
Sbjct:  108 YHQGEQVVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNVMVSSYART 311          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.548e-34
Identity = 78/204 (38.24%), Postives = 117/204 (57.35%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAAEPRT 616
            Y +G + +D  +D+V +EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L+ PTF   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R     R  TV ++ +++   KN+M ++  RT
Sbjct:   60 YHQGEQFVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQVETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQVNMIRKTTVLDVMRRLLQTKNIMVSSYART 263          
The following BLAST results are available for this feature:
BLAST of FC920866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBA4_DROME2.087e-3938.73Tubulin alpha-4 chain OS=Drosophila melanogaster G... [more]
TBAB_SCHCO2.726e-3938.73Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]
TBA2_HOMAM6.073e-3936.76Tubulin alpha-2 chain OS=Homarus americanus PE=2 S... [more]
TBAL3_MOUSE5.141e-3837.25Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]
TBAL3_HUMAN5.141e-3836.76Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBA1_STYLE3.333e-3739.22Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA_AJECA2.388e-3536.59Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBA4_CHICK3.119e-3538.25Tubulin alpha-4 chain (Fragment) OS=Gallus gallus ... [more]
TBG2_MAIZE1.185e-3438.24Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV... [more]
TBG3_MAIZE1.548e-3438.24Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TU... [more]

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Properties
Property NameValue
Genbank descriptionC32014A06EF RVDevelop1 Citrus clementina cDNA clone C32014A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920866 ID=FC920866; Name=FC920866; organism=Citrus clementina; type=EST; length=634bp
CAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGATTTTCCTCTGGATG
TTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTA
TGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTAT
TTCCAAGATCAGGGAGGAGTATCCAGATCGCATGATGTTGACATTTTCCG
TCTTCCCGTCTCCTAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCT
ACCCTCTCAGTACATCAGCTTGTTGAGAATGCCGATGAATGTATGGTGCT
AGATAATGAAGCTCTATATGATATTTGCTTCAGAACTCTCAAGCTCGCCA
CCCCTACTTTTGGTGATCTTAACCATCTTATCTCTGCTACCATGAGTGGC
GTCACATGCTGTCTTCGATTCCCCGGACAGCTGAACTCTGACCTCAGGAA
GCTTGCTGTTAACCTTATCCCTTTCCCGCGTCTCCATTTCTTCATGGTTG
GGTTTGCACCCTTGACATCACGAGGATCACAGCAGTATCGTGCCCTTACT
GTGCCAGAACTAACCCAGCAGATGTGGGATGCTAAGAACATGATGTGTGC
TGCTGAACCACGCACGGTCGTTACCTAACTGCTT
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