FC920866
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG1_RAT (Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg1 PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.712e-33 Identity = 73/197 (37.06%), Postives = 119/197 (60.41%), Query Frame = 2 Query: 11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRALTVPELTQQMWDAKNMM 595 +++G ++ + D++ +EA+ D L+GF +CH + ++ + YP +++ T+SVFP+ ++SD VV+PYN+ L++ +L +NAD +VLDN AL I L + P+F +N L+S MS T LR+PG +N+DL L +LIP PRLHF M G+ PLT+ S R TV ++ +++ KN+M Sbjct: 108 FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG1_MOUSE (Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=1 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.712e-33 Identity = 73/197 (37.06%), Postives = 119/197 (60.41%), Query Frame = 2 Query: 11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRALTVPELTQQMWDAKNMM 595 +++G ++ + D++ +EA+ D L+GF +CH + ++ + YP +++ T+SVFP+ ++SD VV+PYN+ L++ +L +NAD +VLDN AL I L + P+F +N L+S MS T LR+PG +N+DL L +LIP PRLHF M G+ PLT+ S R TV ++ +++ KN+M Sbjct: 108 FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG1_CANFA (Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 3.813e-33 Identity = 72/197 (36.55%), Postives = 118/197 (59.90%), Query Frame = 2 Query: 11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRALTVPELTQQMWDAKNMM 595 +++G ++ + D++ +EA+ D L+GF +CH + ++ + YP +++ T+SVFP+ ++SD VV+PYN+ L++ +L +NAD +VLDN L I L + P+F +N L+S MS T LR+PG +N+DL L +LIP PRLHF M G+ PLT+ S R TV ++ +++ KN+M Sbjct: 108 FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTTLNRIATNRLHIQNPSFFQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG1_XENLA (Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.504e-33 Identity = 72/197 (36.55%), Postives = 118/197 (59.90%), Query Frame = 2 Query: 11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRALTVPELTQQMWDAKNMM 595 +++G ++ + D++ +EA+ D L+GF +CH + ++ + YP +++ T+SVFP+ ++S VV+PYN+ L++ +L +NAD +VLDN AL I L + P+F +N L+S MS T LR+PG +N+DL L +LIP PRLHF M G+ PLT+ S R TV ++ +++ KN+M Sbjct: 108 FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSHVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.109e-32 Identity = 69/189 (36.51%), Postives = 110/189 (58.20%), Query Frame = 2 Query: 29 LIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 595 L++ +D +RK ENC LQGF + + K+ ++Y + L ++PSPK+S VVEPYNA L+ H +++ + ++DNE++Y IC + L + +P++ LN LI+ MS +T LRF G LN DL + NL+PFPR HF M+ +AP+ + + L+V ELT ++D ++M Sbjct: 119 LLNQTMDAIRKATENCTGLQGFFIYNSVGGGTGSGFTAALCEKLADKYTKKTKLNTVIWPSPKLSSGVVEPYNAVLNTHAMMKFVNCTFMVDNESIYKICQKQLGVHSPSYFHLNQLIAQAMSSITASLRFEGTLNVDLNEFPTNLVPFPRDHFAMMSYAPIVTPEKAIRQTLSVQELTSSLFDPNSLM 307
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 1.892e-32 Identity = 76/207 (36.71%), Postives = 120/207 (57.97%), Query Frame = 2 Query: 11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG---SQQ---YRALTVPELTQQMWDAKNMMCAAEP 610 Y++G +L + D++ +EA+ D L+GF +CH + ++ + YP +++ TFSVFP+ ++SD VV+PYN+ L++ +L AD +VLDN AL I L + P+F +N+L+S MS T LR+P +N++L L LIP P+LHF M G+ PLTS +QQ R TV ++ +++ KNMM + P Sbjct: 108 YSQGEKLQEEVFDIIDREADGSDSLEGFILCHSIAGGTGSGMGSFIMERLADRYPKKLIQTFSVFPNQDEISDVVVQPYNSMLTLKRLTTAADSVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMSVSTTTLRYPSYMNNNLIGLTAPLIPTPQLHFLMTGYTPLTSDSDIHTQQLVNVRKTTVLDVMRRLLQPKNMMVSTGP 314
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_ANEPH (Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG PE=2 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.472e-32 Identity = 76/205 (37.07%), Postives = 119/205 (58.05%), Query Frame = 2 Query: 11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQ-LVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAAEPRT 616 Y +G ++ + +D++ +EA+ D L+GF +CH + + + Y +++ T+SVFP+ + SD VV+PYN+ L++++ L NAD +VLDN AL I L + PTF N L+S MS T LR+PG +N+DL L +LIP PR HF M G+ PLT R + R TV ++ +++ AKN+M ++ RT Sbjct: 108 YHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLNKRLTINADCVVVLDNTALNRIAVDRLHIPNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQANAIRKTTVLDVMRRLLQAKNIMVSSYART 312
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.472e-32 Identity = 75/203 (36.95%), Postives = 115/203 (56.65%), Query Frame = 2 Query: 11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613 Y +G + + +D++ +EA+ D L+GF +CH + + + Y +++ T+SVFP+ + SD VV+PYN+ L++ +L NAD +VLDN AL I L L PTF N L+S MS T LR+PG +N+DL L +LIP PR HF M G+ PLT R + R TV ++ +++ KN+M ++ R Sbjct: 108 YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYAR 310
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.228e-32 Identity = 75/203 (36.95%), Postives = 115/203 (56.65%), Query Frame = 2 Query: 11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613 Y +G + + +D++ +EA+ D L+GF +CH + + + Y +++ T+SVFP+ + SD VV+PYN+ L++ +L NAD +VLDN AL I L L PTF N L+S MS T LR+PG +N+DL L +LIP PR HF M G+ PLT R + R TV ++ +++ KN+M ++ R Sbjct: 108 YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALGRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYAR 310
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3) HSP 1 Score: 137.887 bits (346), Expect = 4.216e-32 Identity = 72/201 (35.82%), Postives = 119/201 (59.20%), Query Frame = 2 Query: 11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS--RGSQQYRALTVPELTQQMWDAKNMMCAA 604 +++G ++ + D++ +EA+ D L+GF +CH + ++ E +P +++ T+SVFP+ ++SD VV+PYN+ L++ +L + AD +VLDN AL I L + TPTF +N+L+S MS T LR+P +N++L L +LIP P+LHF M G+ PL S R TV ++ +++ KNMM +A Sbjct: 108 FSQGEKVQEEVFDILDREADGSDSLEGFVLCHSIAGGTGSGMGSYVLERLSERFPKKLIQTYSVFPNQDEISDVVVQPYNSILTLKRLTKCADSVVVLDNTALNRIATERLHIQTPTFTQINNLVSTIMSLSTTTLRYPSYMNNNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQPKNMMVSA 308 The following BLAST results are available for this feature:
BLAST of FC920866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 419
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920866 ID=FC920866; Name=FC920866; organism=Citrus clementina; type=EST; length=634bpback to top |