FC920866

Overview
NameFC920866
Unique NameFC920866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG1_RAT (Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.712e-33
Identity = 73/197 (37.06%), Postives = 119/197 (60.41%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRALTVPELTQQMWDAKNMM 595
            +++G ++ +   D++ +EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++SD VV+PYN+ L++ +L +NAD  +VLDN AL  I    L +  P+F  +N L+S  MS  T  LR+PG +N+DL  L  +LIP PRLHF M G+ PLT+  S    R  TV ++ +++   KN+M
Sbjct:  108 FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG1_MOUSE (Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.712e-33
Identity = 73/197 (37.06%), Postives = 119/197 (60.41%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRALTVPELTQQMWDAKNMM 595
            +++G ++ +   D++ +EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++SD VV+PYN+ L++ +L +NAD  +VLDN AL  I    L +  P+F  +N L+S  MS  T  LR+PG +N+DL  L  +LIP PRLHF M G+ PLT+  S    R  TV ++ +++   KN+M
Sbjct:  108 FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG1_CANFA (Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.813e-33
Identity = 72/197 (36.55%), Postives = 118/197 (59.90%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRALTVPELTQQMWDAKNMM 595
            +++G ++ +   D++ +EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++SD VV+PYN+ L++ +L +NAD  +VLDN  L  I    L +  P+F  +N L+S  MS  T  LR+PG +N+DL  L  +LIP PRLHF M G+ PLT+  S    R  TV ++ +++   KN+M
Sbjct:  108 FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTTLNRIATNRLHIQNPSFFQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG1_XENLA (Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.504e-33
Identity = 72/197 (36.55%), Postives = 118/197 (59.90%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRALTVPELTQQMWDAKNMM 595
            +++G ++ +   D++ +EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++S  VV+PYN+ L++ +L +NAD  +VLDN AL  I    L +  P+F  +N L+S  MS  T  LR+PG +N+DL  L  +LIP PRLHF M G+ PLT+  S    R  TV ++ +++   KN+M
Sbjct:  108 FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSHVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.109e-32
Identity = 69/189 (36.51%), Postives = 110/189 (58.20%), Query Frame = 2
Query:   29 LIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 595
            L++  +D +RK  ENC  LQGF + +                K+ ++Y  +  L   ++PSPK+S  VVEPYNA L+ H +++  +   ++DNE++Y IC + L + +P++  LN LI+  MS +T  LRF G LN DL +   NL+PFPR HF M+ +AP+ +      + L+V ELT  ++D  ++M
Sbjct:  119 LLNQTMDAIRKATENCTGLQGFFIYNSVGGGTGSGFTAALCEKLADKYTKKTKLNTVIWPSPKLSSGVVEPYNAVLNTHAMMKFVNCTFMVDNESIYKICQKQLGVHSPSYFHLNQLIAQAMSSITASLRFEGTLNVDLNEFPTNLVPFPRDHFAMMSYAPIVTPEKAIRQTLSVQELTSSLFDPNSLM 307          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.892e-32
Identity = 76/207 (36.71%), Postives = 120/207 (57.97%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG---SQQ---YRALTVPELTQQMWDAKNMMCAAEP 610
            Y++G +L +   D++ +EA+  D L+GF +CH              + ++ + YP +++ TFSVFP+  ++SD VV+PYN+ L++ +L   AD  +VLDN AL  I    L +  P+F  +N+L+S  MS  T  LR+P  +N++L  L   LIP P+LHF M G+ PLTS     +QQ    R  TV ++ +++   KNMM +  P
Sbjct:  108 YSQGEKLQEEVFDIIDREADGSDSLEGFILCHSIAGGTGSGMGSFIMERLADRYPKKLIQTFSVFPNQDEISDVVVQPYNSMLTLKRLTTAADSVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMSVSTTTLRYPSYMNNNLIGLTAPLIPTPQLHFLMTGYTPLTSDSDIHTQQLVNVRKTTVLDVMRRLLQPKNMMVSTGP 314          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_ANEPH (Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.472e-32
Identity = 76/205 (37.07%), Postives = 119/205 (58.05%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQ-LVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAAEPRT 616
            Y +G ++ +  +D++ +EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++++ L  NAD  +VLDN AL  I    L +  PTF   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R +   R  TV ++ +++  AKN+M ++  RT
Sbjct:  108 YHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLNKRLTINADCVVVLDNTALNRIAVDRLHIPNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQANAIRKTTVLDVMRRLLQAKNIMVSSYART 312          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.472e-32
Identity = 75/203 (36.95%), Postives = 115/203 (56.65%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            Y +G  + +  +D++ +EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L  PTF   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R +   R  TV ++ +++   KN+M ++  R
Sbjct:  108 YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYAR 310          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.228e-32
Identity = 75/203 (36.95%), Postives = 115/203 (56.65%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            Y +G  + +  +D++ +EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L  PTF   N L+S  MS  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT  R +   R  TV ++ +++   KN+M ++  R
Sbjct:  108 YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALGRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYAR 310          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 4.216e-32
Identity = 72/201 (35.82%), Postives = 119/201 (59.20%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS--RGSQQYRALTVPELTQQMWDAKNMMCAA 604
            +++G ++ +   D++ +EA+  D L+GF +CH              + ++ E +P +++ T+SVFP+  ++SD VV+PYN+ L++ +L + AD  +VLDN AL  I    L + TPTF  +N+L+S  MS  T  LR+P  +N++L  L  +LIP P+LHF M G+ PL S        R  TV ++ +++   KNMM +A
Sbjct:  108 FSQGEKVQEEVFDILDREADGSDSLEGFVLCHSIAGGTGSGMGSYVLERLSERFPKKLIQTYSVFPNQDEISDVVVQPYNSILTLKRLTKCADSVVVLDNTALNRIATERLHIQTPTFTQINNLVSTIMSLSTTTLRYPSYMNNNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQPKNMMVSA 308          
The following BLAST results are available for this feature:
BLAST of FC920866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBG1_RAT1.712e-3337.06Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg... [more]
TBG1_MOUSE1.712e-3337.06Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=... [more]
TBG1_CANFA3.813e-3336.55Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1... [more]
TBG1_XENLA6.504e-3336.55Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 P... [more]
TBA1_ENTHI1.109e-3236.51Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]
TBG1_DROME1.892e-3236.71Tubulin gamma-1 chain OS=Drosophila melanogaster G... [more]
TBG_ANEPH2.472e-3237.07Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG ... [more]
TBG2_ARATH2.472e-3236.95Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=T... [more]
TBG1_ARATH3.228e-3236.95Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBG2_DROME4.216e-3235.82Tubulin gamma-2 chain OS=Drosophila melanogaster G... [more]

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Properties
Property NameValue
Genbank descriptionC32014A06EF RVDevelop1 Citrus clementina cDNA clone C32014A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920866 ID=FC920866; Name=FC920866; organism=Citrus clementina; type=EST; length=634bp
CAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGATTTTCCTCTGGATG
TTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTA
TGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTAT
TTCCAAGATCAGGGAGGAGTATCCAGATCGCATGATGTTGACATTTTCCG
TCTTCCCGTCTCCTAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCT
ACCCTCTCAGTACATCAGCTTGTTGAGAATGCCGATGAATGTATGGTGCT
AGATAATGAAGCTCTATATGATATTTGCTTCAGAACTCTCAAGCTCGCCA
CCCCTACTTTTGGTGATCTTAACCATCTTATCTCTGCTACCATGAGTGGC
GTCACATGCTGTCTTCGATTCCCCGGACAGCTGAACTCTGACCTCAGGAA
GCTTGCTGTTAACCTTATCCCTTTCCCGCGTCTCCATTTCTTCATGGTTG
GGTTTGCACCCTTGACATCACGAGGATCACAGCAGTATCGTGCCCTTACT
GTGCCAGAACTAACCCAGCAGATGTGGGATGCTAAGAACATGATGTGTGC
TGCTGAACCACGCACGGTCGTTACCTAACTGCTT
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