FC920866

Overview
NameFC920866
Unique NameFC920866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.392e-32
Identity = 74/208 (35.58%), Postives = 116/208 (55.77%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG-----SQQYRALTVPELTQQMWDAKNMMCAAEPRT 616
            YT+G  + +  LD++ +EAE CD L+GF +CH              +  I + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  +AD  +VLDN AL  I    L L  P    +N LI+  M+  T  LR+PG +N+DL  L  +LIP PR HF M G+ PLT+       +   R  TV ++ +++   KN+M +   ++
Sbjct:  108 YTQGEAVQETLLDMIDREAEYCDSLEGFNMCHSIAGGTGSGMGSYMLELISDRYSKKLIQTYSVFPNQSESSDVVVQPYNSLLTLKRLTLHADAVVVLDNTALDKIAVERLHLHKPDVQQINSLIATVMAASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTAENAAGQVTSNIRKTTVLDVMRRLLQPKNIMVSTHTKS 315          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_SCHPO (Tubulin gamma chain OS=Schizosaccharomyces pombe GN=tug1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.569e-31
Identity = 70/204 (34.31%), Postives = 114/204 (55.88%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFP-SPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRAL---TVPELTQQMWDAKNMMCAAEP 610
            Y+    + +  +D++ +EA+  D L+GF + H              + ++ + YP +++ T+SVFP S  VSD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L    PTF   N L+S  MS  T  LR+PG +N+DL  +  +LIP PR HF +  + P T++  ++ +A+   TV ++ +++   KN M +  P
Sbjct:  108 YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNP 311          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.661e-31
Identity = 69/196 (35.20%), Postives = 112/196 (57.14%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRALTVPELTQQMWDAKNMM 595
            YT+  ++ D  L+++ +EA+  D L+GF + H              + ++ + YP +++ T+SVFP    +D VV+PYN  LS+ +L  NAD  +VLDN AL  I    LK+  PTF  +N ++S  M+  T  LR+PG +N+D+  L  +L+P PR HF M G+ PL+  +     R  TV ++ +++   KN+M
Sbjct:  108 YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSLDQKFNSVRKTTVLDVMRRLLQTKNIM 301          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.088e-31
Identity = 70/204 (34.31%), Postives = 113/204 (55.39%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRAL---TVPELTQQMWDAKNMMCAAEP 610
            Y    ++ +  +D++ +EAE  D L+GF + H              + ++ + +P +++ T+SVFP+ + VSD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L +  PTF   N L+S  MS  T  LR+PG +N+DL  +  +LIP PR HF    + P TS+  +  R +   TV ++ +++   KN M +  P
Sbjct:  108 YAHAEKIFEDIVDMIDREAEGSDSLEGFSLLHSIAGGTGSGLGSYLLERLNDRFPKKIVQTYSVFPNNRSVSDVVVQPYNSLLTLKRLTLNADAVVVLDNAALAHIAADRLHIQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPTPRCHFLSTSYTPFTSQQVEDARTIRKTTVLDVMRRLLQPKNRMVSVNP 311          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.088e-31
Identity = 69/196 (35.20%), Postives = 112/196 (57.14%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRALTVPELTQQMWDAKNMM 595
            YT+  ++ D  L+++ +EA+  D L+GF + H              + ++ + YP +++ T+SVFP    +D VV+PYN  LS+ +L  NAD  +VLDN AL  I    LK+  PTF  +N ++S  M+  T  LR+PG +N+D+  L  +L+P PR HF M G+ PL+  +     R  TV ++ +++   KN+M
Sbjct:  108 YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSLDQKFTSVRKTTVLDVMRRLLQTKNIM 301          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.038e-30
Identity = 71/198 (35.86%), Postives = 113/198 (57.07%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY---RALTVPELTQQMWDAKNMM 595
            YT+  ++ D  L+++ +EA+  D L+GF + H              + +I + YP +++ T+SVFP    +D VV+PYN  LS+ +L  NAD  +VLDN AL  I    LK+  PTF  +N ++S  M+  T  LR+PG +N+D+  L  +L+P PR HF M G+ PL+    Q+Y   R  T  ++ +++   KN+M
Sbjct:  108 YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERINDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPGYMNNDMVGLIASLVPTPRCHFLMTGYTPLSL--DQKYTSVRKTTFLDVMRRLLQTKNIM 301          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG2_EUPCR (Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.038e-30
Identity = 70/197 (35.53%), Postives = 113/197 (57.36%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ--QYRALTVPELTQQMWDAKNMM 595
            Y EGA+  +  ++++ +EA+  D L+GF + H              + K+ + YP +++ T+SVFP+   +D VV+PYN  LS+ +LV NAD  +VLDN A+  I    LKL  PT   +N ++S  M+  T  LR+PG +N+DL  L  +L+P PR HF M G+ PL+    +    R  TV ++ +++   +N+M
Sbjct:  108 YCEGAKYEEEIIEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLEKLNDHYPKKLVQTYSVFPND--NDIVVQPYNCILSMKRLVLNADCVVVLDNTAITSIAVDRLKLLHPTISQVNSIVSTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPLSLNDQKVSSIRKTTVLDVMRRLLQTRNIM 302          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_COPC7 (Tubulin gamma chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TUB4 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.356e-30
Identity = 68/203 (33.50%), Postives = 114/203 (56.16%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS---RGSQQYRALTVPELTQQMWDAKNMMCAAEP 610
            Y+ G  + +  ++++ +EAE  D L+GF V H              + ++ +++P +++ T+SVFP+ +  D VV+PYN+ L++ +LV +AD  +VLDN AL  I    L + TP+F   N L+S  ++  T  LR+PG +N+DL  +  +LIP PR HF M  + P TS     ++  R  TV ++ +++   KN M    P
Sbjct:  108 YSAGERIYEDIMEMIDREAEGSDSLEGFMVMHSIAGGTGSGLGSFLLERLNDKFPKKLIQTYSVFPNAQEGDVVVQPYNSLLALKRLVNHADSVVVLDNGALARISADRLHVQTPSFDQTNQLVSTVIAASTQTLRYPGYMNNDLVGIIASLIPTPRCHFLMTSYTPFTSDQIDKAKTIRRTTVLDVMRRLLQPKNRMVLTTP 310          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.153e-30
Identity = 68/197 (34.52%), Postives = 113/197 (57.36%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT--SRGSQQYRALTVPELTQQMWDAKNMM 595
            Y +  ++ +  ++++ +EA+  D L+GF + H              + ++ + YP +++ T+SVFP+   +D VV+PYN  LS+ +L+ NAD  +VLDN AL  I    LKL  PTF  +N ++S  M+  T  LR+PG +N+DL  L  +L+P PR HF M G+ PL+   +     R  TV ++ +++   KN+M
Sbjct:  108 YCDAEKVQEEIIEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPNE--NDVVVQPYNCLLSMKRLILNADCVVVLDNTALTSIAVDRLKLLQPTFPQINSIVSTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRCHFLMTGYTPLSLIDQKVTSVRKTTVLDVMRRLLQTKNIM 302          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_USTVI (Tubulin gamma chain OS=Ustilago violacea GN=TUB4 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.731e-30
Identity = 67/198 (33.84%), Postives = 108/198 (54.55%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRAL---TVPELTQQMWDAKNMM 595
            Y  G  + +  ++++ +EAE  D L+GF + H              + ++ + YP +++ T+SVFP     D VV+PYN+ LS+ +L  +AD  +VLDN AL  IC   L +   +F   N L+S  MS  T  LR+PG +N+DL  +  +LIP PR HF    + P TS   +Q +A+   TV ++ +++   KN +
Sbjct:  108 YAAGERVYEEVMEMIDREAEGSDSLEGFMLLHSIAGGTGSGLGSYLLERMNDRYPKKLIQTYSVFPDADSGDVVVQPYNSLLSMKRLTNHADSVIVLDNAALSKICQDRLHVQVASFAQTNQLVSTVMSASTQTLRYPGYMNNDLVGMIASLIPTPRCHFLTTSYTPFTSDKIEQAKAVRKTTVLDVMRRLLQPKNRL 305          
The following BLAST results are available for this feature:
BLAST of FC920866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBG_CHLRE9.392e-3235.58Tubulin gamma chain OS=Chlamydomonas reinhardtii G... [more]
TBG_SCHPO3.569e-3134.31Tubulin gamma chain OS=Schizosaccharomyces pombe G... [more]
TBG1_EUPOC4.661e-3135.20Tubulin gamma-1 chain OS=Euplotes octocarinatus PE... [more]
TBG_SCHJP6.088e-3134.31Tubulin gamma chain OS=Schizosaccharomyces japonic... [more]
TBG2_EUPOC6.088e-3135.20Tubulin gamma-2 chain OS=Euplotes octocarinatus PE... [more]
TBG_EUPAE1.038e-3035.86Tubulin gamma chain OS=Euplotes aediculatus PE=2 S... [more]
TBG2_EUPCR1.038e-3035.53Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG_COPC71.356e-3033.50Tubulin gamma chain OS=Coprinopsis cinerea (strain... [more]
TBG1_EUPCR5.153e-3034.52Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG_USTVI6.731e-3033.84Tubulin gamma chain OS=Ustilago violacea GN=TUB4 P... [more]

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Properties
Property NameValue
Genbank descriptionC32014A06EF RVDevelop1 Citrus clementina cDNA clone C32014A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920866 ID=FC920866; Name=FC920866; organism=Citrus clementina; type=EST; length=634bp
CAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGATTTTCCTCTGGATG
TTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTA
TGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTAT
TTCCAAGATCAGGGAGGAGTATCCAGATCGCATGATGTTGACATTTTCCG
TCTTCCCGTCTCCTAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCT
ACCCTCTCAGTACATCAGCTTGTTGAGAATGCCGATGAATGTATGGTGCT
AGATAATGAAGCTCTATATGATATTTGCTTCAGAACTCTCAAGCTCGCCA
CCCCTACTTTTGGTGATCTTAACCATCTTATCTCTGCTACCATGAGTGGC
GTCACATGCTGTCTTCGATTCCCCGGACAGCTGAACTCTGACCTCAGGAA
GCTTGCTGTTAACCTTATCCCTTTCCCGCGTCTCCATTTCTTCATGGTTG
GGTTTGCACCCTTGACATCACGAGGATCACAGCAGTATCGTGCCCTTACT
GTGCCAGAACTAACCCAGCAGATGTGGGATGCTAAGAACATGATGTGTGC
TGCTGAACCACGCACGGTCGTTACCTAACTGCTT
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