FC920866

Overview
NameFC920866
Unique NameFC920866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.731e-30
Identity = 66/203 (32.51%), Postives = 115/203 (56.65%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAAEPRT 616
            Y +G    D   D++ +EA+  + L+GF + H              + ++ + +P +++ T+SVFP    S  VV+ YN+ L++ +L+ENAD  +VLDN AL+ I    L++  PT    N L+S  MS  T  LR+PG +N+DL  +  +LIP P+ HF + G+ PL+  R ++  R  +V ++ +++   +N+M +A  +T
Sbjct:  108 YKQGESFYDDIFDMIDREADGSESLEGFLLTHSISGGTGSGMGSYILERLNDRFPKKIIQTYSVFPDD--SSVVVQQYNSVLTLKRLIENADSTVVLDNNALHRIVGENLRIDQPTMDQTNSLVSTVMSASTTTLRYPGYMNNDLVGMLASLIPTPKCHFLITGYTPLSIDRQTESVRKTSVLDVMRRLLQPQNIMVSAPTKT 308          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_EMENI (Tubulin gamma chain OS=Emericella nidulans GN=mipA PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.363e-29
Identity = 66/203 (32.51%), Postives = 107/203 (52.71%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQ---YRALTVPELTQQMWDAKNMMCAAEP 610
            Y  G  + +   D++ +EA+  D L+GF   H              + ++ + +P +++ T+SVFP  + +D VV PYN+ L++ +L +NAD  +VLDN AL  I    L +  P+F   N L+S  MS  T  LR+PG +++DL  +  +LIP PR HF +  + P T     Q    R  TV ++ +++   KN M +  P
Sbjct:  108 YAAGEVVQEEVFDMIDREADGSDSLEGFMFLHSIAGGTGSGLGSFLLERMNDRFPKKLIQTYSVFPDTQAADVVVNPYNSLLAMRRLTQNADSVVVLDNAALSRIVADRLHVQEPSFQQTNRLVSTVMSASTTTLRYPGYMHNDLVGIIASLIPTPRSHFLLTSYTPFTGDNIDQAKTVRKTTVLDVMRRLLQPKNRMVSINP 310          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA4B_HUMAN (Putative tubulin-like protein alpha-4B OS=Homo sapiens GN=TUBA4B PE=5 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 5.698e-29
Identity = 66/168 (39.29%), Postives = 95/168 (56.55%), Query Frame = 2
Query:    5 GHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLI-------PFPRLH 487
            GHYT G E ID  LD +RK A+ C  LQGF V H              +  +   Y  +  L FS++P+P+VS  +V+PYN+ L+ H  +E++D   ++DN+A+YDIC   L +  PT+ +LN LIS  +S +T  LRF G LN DL +   NL+       P+P +H
Sbjct:   45 GHYTIGKEFIDLLLDRIRKLADQCTGLQGFLVFHSLGRGTGSDVTSFLMEWLSVNYGKKSKLGFSIYPAPQVSTAMVQPYNSILTTHTTLEHSDCAFMVDNKAIYDICHCNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVSYLTSTSPWPPMH 212          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_NEUCR (Tubulin gamma chain OS=Neurospora crassa GN=tub-4 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.719e-29
Identity = 66/204 (32.35%), Postives = 110/204 (53.92%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFP-SPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQ---YRALTVPELTQQMWDAKNMMCAAEP 610
            Y  G ++ +  ++++ +EA+  D L+GF + H              + ++ + +P +++ T+SVFP +    D VV PYN+ L++ +L +NAD  +VLDN AL  I    L +  P+F   N L+S  MS  T  LR+PG +++DL  +  +LIP PR HF M  + P T    +Q    R  TV ++ +++   KN M +  P
Sbjct:  108 YQTGEQVHEEIMEMIEREADGSDSLEGFMMLHSIAGGTGSGLGSFLLERLNDRFPKKIIQTYSVFPDTTSAGDVVVHPYNSLLAMRRLTQNADSVVVLDNGALSHIAADRLHVQEPSFQQTNQLVSTVMSASTTTLRYPGYMHNDLVSILASLIPTPRCHFLMTSYTPFTGDQVEQAKTVRKTTVLDVMRRLLQPKNRMVSTVP 311          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 4.823e-28
Identity = 66/202 (32.67%), Postives = 110/202 (54.46%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVG--FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEP 610
            Y+ G ++ +   D++ +EA+  D L+GF + H              + ++ + +P +++ T+SVFP+ +  D VV+PYN+ LS+ +L +NAD  +VLDN AL  I    L + TP+F   N L+S  MS  T  LR+P   ++DL  +  +LIP PR HF M    F+      ++  R  TV ++ +++   KN M +  P
Sbjct:   43 YSMGEQVHEDIWDMIDREADGSDSLEGFMMLHSIAGGTGSGLGSYMLERLNDRFPKKLIQTYSVFPNTQDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGALTRIAADRLHVMTPSFEQTNQLVSTVMSASTTTLRYPAYSHNDLVGIVASLIPTPRCHFLMTSYTFSGENVEQAKTVRKTTVLDVMRRLLQPKNRMVSTNP 244          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.228e-28
Identity = 66/197 (33.50%), Postives = 113/197 (57.36%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKV-SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ-QYRALTVPELTQQMWDAKNMM 595
            YT   E  +  +D++ +E +N D L+GF + H              + ++ + YP +++ T+SVFP+    S  VV PYN+ L++ +L+ NAD  +V+DN +L+ I    L+L   +F + N +IS  M+  T  LR+PG +N+DL  L  +L+P PR HF M  F PL  +G+Q + +  +V ++ +++   KN+M
Sbjct:  108 YTHATEKYEHIMDMIDRE-DNSDSLEGFVLTHSIAGGTGSGFGSHMLEQLTDRYPKKIIQTYSVFPNDSERSSVVVHPYNSVLALKRLILNADAVVVIDNTSLHRIADERLQLDFASFKETNSIISTVMAASTTTLRYPGYMNNDLVGLIASLVPTPRAHFLMTSFTPLVIKGAQRRIQKTSVLDVMRRLLQPKNIM 303          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_PLAFO (Tubulin gamma chain OS=Plasmodium falciparum (isolate NF54) GN=G-TUB PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.188e-26
Identity = 66/204 (32.35%), Postives = 114/204 (55.88%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFP--SPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLT-SRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            Y++G ++ +  +D++ +E +N D L+GF + H              +  + + Y  +M+ TFSVFP  + + SD VV+PYN+ L++ +L+ + D  +V+DN +L  I    LKL  PTF   N +IS  MS  T  LR+PG +N+D+  L  +LI  P+ HF +  + P+T  +     +  TV ++ +++   KN+M +A  R
Sbjct:  108 YSQGHKVEEEIIDMIDREVDNSDNLEGFILSHSIAGGTGSGMGSYLLELLNDNYSKKMIQTFSVFPLLTNESSDVVVQPYNSILTLKRLILSTDSVVVIDNTSLNRIFVERLKLNNPTFQQTNTIISNVMSASTTTLRYPGSMNNDMISLISSLIINPKCHFLITSYTPITIDKHISNVQKTTVLDVMKRLLHTKNIMVSAPVR 311          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.992e-25
Identity = 63/204 (30.88%), Postives = 113/204 (55.39%), Query Frame = 2
Query:    5 GH-YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPS-PKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAP-LTSRGSQQYRALTVPELTQQMWDAKNMMCAAE 607
            GH Y  G  + +  +D++++EAE CD L+ F + H              + +I+EE+P +++ T+S+FP+  + SD VV+PYN+ L++H+L+EN+D  +V+DN +L      +L++ TPTF  +N LIS  M+  T  +RFPG +    + +   L+P   L F +  + P +    S+  R  T  ++ +++   K  +   E
Sbjct:   98 GHGYCVGKAMGNDVIDMIQREAEGCDALETFLLLHSIAGGTGSGFGSLLLERIKEEFPKKIVQTYSIFPNNDESSDVVVQPYNSVLTLHRLIENSDCIVVMDNSSLGRYTLDSLRIGTPTFDHINLLISTVMAASTSTIRFPGYMYCTHQSINNCLVPLDPLKFVVPSYTPFVCDEMSRVVRKATCSDVMRRLLLPKTRLAGYE 301          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.112e-24
Identity = 62/207 (29.95%), Postives = 110/207 (53.14%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS---RGSQQYRALTVPELTQQMWDAKNMMCAAEPRTVV 622
            Y  G E  D  ++++ KE +     +GFQ+ H              +  + + Y  +++ T+SVFPS + S+ VV+PYN  L++ +L++N+D  ++ DN+AL ++  R L+ +  ++   N LI++ MS VT  LRFP  + + L  +   L+P P LHF    F P TS    G++ ++ L+  ++   ++D  N M   +  T V
Sbjct:  110 YDYGLEKQDEFMNMIDKEIDATGNFEGFQLIHSVAGGTGSGLGSNLLEALSDRYHKKIVSTYSVFPS-RESEVVVQPYNTILTLRRLIDNSDASVLFDNDALLNLTARVLRDSNTSYQQTNQLIASVMSSVTNSLRFPSYMYNSLPSIFSTLVPTPELHFLAPSFTPFTSDFVPGAKDFKRLSAYDVILDLFDKNNSMVTRDTDTPV 315          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.208e-24
Identity = 61/198 (30.81%), Postives = 100/198 (50.51%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR---GSQQYRALTVPELTQQMWDAKNMM 595
            Y  G +  D  +D++ +E ++ D  +GFQ+ H              +  + + Y    + T+SVFPS K S+ VV PYN  L++ +L E+AD  ++ DN AL ++  RT +    ++   N LIS+ +S +T  LRFP  + + +  +   LIP P LHF    F P T     G Q+Y+  T  ++   + D  N +
Sbjct:  110 YDRGVQNQDRIMDIIDRELDSTDNFEGFQLLHSVAGGTGSGLGSSLLEALTDRYSKSFITTYSVFPS-KQSEVVVGPYNTVLTLRRLCEDADASIIFDNNALLNLTARTFRDPNTSYEHTNQLISSALSSITNSLRFPSYMYNSMASIFSTLIPTPELHFLTPNFTPFTPDYIIGGQRYKKNTAYDVLLDLLDPFNSL 306          
The following BLAST results are available for this feature:
BLAST of FC920866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBG_DICDI6.731e-3032.51Tubulin gamma chain OS=Dictyostelium discoideum GN... [more]
TBG_EMENI4.363e-2932.51Tubulin gamma chain OS=Emericella nidulans GN=mipA... [more]
TBA4B_HUMAN5.698e-2939.29Putative tubulin-like protein alpha-4B OS=Homo sap... [more]
TBG_NEUCR9.719e-2932.35Tubulin gamma chain OS=Neurospora crassa GN=tub-4 ... [more]
TBG_COCHE4.823e-2832.67Tubulin gamma chain (Fragment) OS=Cochliobolus het... [more]
TBG_RETFI8.228e-2833.50Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV... [more]
TBG_PLAFO1.188e-2632.35Tubulin gamma chain OS=Plasmodium falciparum (isol... [more]
TBG_ENCCU4.992e-2530.88Tubulin gamma chain OS=Encephalitozoon cuniculi GN... [more]
TBG_ASHGO1.112e-2429.95Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=... [more]
TBG_CANGA7.208e-2430.81Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE... [more]

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Properties
Property NameValue
Genbank descriptionC32014A06EF RVDevelop1 Citrus clementina cDNA clone C32014A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920866 ID=FC920866; Name=FC920866; organism=Citrus clementina; type=EST; length=634bp
CAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGATTTTCCTCTGGATG
TTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTA
TGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTAT
TTCCAAGATCAGGGAGGAGTATCCAGATCGCATGATGTTGACATTTTCCG
TCTTCCCGTCTCCTAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCT
ACCCTCTCAGTACATCAGCTTGTTGAGAATGCCGATGAATGTATGGTGCT
AGATAATGAAGCTCTATATGATATTTGCTTCAGAACTCTCAAGCTCGCCA
CCCCTACTTTTGGTGATCTTAACCATCTTATCTCTGCTACCATGAGTGGC
GTCACATGCTGTCTTCGATTCCCCGGACAGCTGAACTCTGACCTCAGGAA
GCTTGCTGTTAACCTTATCCCTTTCCCGCGTCTCCATTTCTTCATGGTTG
GGTTTGCACCCTTGACATCACGAGGATCACAGCAGTATCGTGCCCTTACT
GTGCCAGAACTAACCCAGCAGATGTGGGATGCTAAGAACATGATGTGTGC
TGCTGAACCACGCACGGTCGTTACCTAACTGCTT
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