FC920866

Overview
NameFC920866
Unique NameFC920866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11184 contig Ccv1_Contig11184:390..1023. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.414e-24
Identity = 64/202 (31.68%), Postives = 103/202 (50.99%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVS-DTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            Y +G E+ +  +D++ +EAEN + L G    H              + ++RE +P +++ T+SVF +   S D VV PYN  LS+ +L+EN D  +VLDN AL+ +     K  TPTF  +N L++  MS  T   RF   +   +R L  +L PFP +HF     +P+        R  +V ++T+ +    +MM +   R
Sbjct:  110 YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALHRLAAGKFKTDTPTFDHINSLVARIMSTSTAPYRFNSAMCPSIRYL--DLAPFPPMHFIQSAISPVVDPNENFTRKTSVADVTRFLLKPTSMMVSTASR 309          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.711e-21
Identity = 57/170 (33.53%), Postives = 85/170 (50.00%), Query Frame = 2
Query:    5 GHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPL 514
            G+YT   E +    +++ +E E+CD L+GF  CH              +  I E+YP  ++ +FSV       D VV PYN+ L++ +L+      +V DN AL DI      +   T  D+N +IS++MS  T  LRFP  L + L  L ++L P    HF M  + PL
Sbjct:  105 GYYT--TEKMSEIEEIIDREVEHCDSLEGFFFCHSICGGTGSGLGSKIMEMISEKYPKNILTSFSVMVKEN-PDVVVSPYNSILTLRRLITECQSVVVFDNSALADITHTQFGVDEATVFDMNSIISSSMSAFTANLRFPSTLYNSLNSLMIHLCPSRFSHFLMTSYTPL 271          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.170e-20
Identity = 61/229 (26.64%), Postives = 110/229 (48.03%), Query Frame = 2
Query:    5 GHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFR------------TLK---LATPTFGDL-----------NHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            GH   G+   D  L+  RK AE+CDCLQ F + H              +  + +E+P+      S++PS +  D +  PYN+ L++ +L E+AD  + +DN++L+DI  +            T+K   L T + G L           N++++  +  +T   RF G LN DL ++++NL+PFP+LH+ +    PL +          + ++    +   + +  A+P+
Sbjct:  112 GHKVFGSLYQDQILEKFRKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTSIYPSGE-DDVITSPYNSILAMKELNEHADCVLPIDNQSLFDIISKIDLMVNSGKLGTTVKPKSLVTSSSGALKKQHKKPFDAMNNIVANLLLNLTSSARFEGSLNMDLNEISMNLVPFPQLHYLVSSLTPLYTLTDVNIPPRRLDQMFSDAFSKDHQLLRADPK 339          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.702e-20
Identity = 58/229 (25.33%), Postives = 105/229 (45.85%), Query Frame = 2
Query:    5 GHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDI---------------CFRTLKLATPTFGD-----------LNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            GH   G    +  L+ +RK AE CDCLQ F + H              +  + +E+P+      +V+PS +  D +  PYN+ L++ +L E+AD  + +DN++L+DI                 +   L T   G            +N++++  +  +T   RF G LN DL ++++NL+PFP+LH+ +    PL +          + ++    +   + +  A+PR
Sbjct:  112 GHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVITSPYNSMLAMKELNEHADCVLPIDNQSLFDIISKIDLVVNSGKLGSAVKPKSLITSNMGAVKKHHKKPFDAMNNIVANLLLSLTSSARFEGSLNMDLNEISMNLVPFPKLHYLVSSLTPLYTLADVNIPPRRLDQMFSDAFSKDHQLIQADPR 339          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.835e-20
Identity = 54/170 (31.76%), Postives = 87/170 (51.18%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS 520
            Y  G    D  L+ + KE ++ D  +GFQ+ H              +  + + YP +++ T+SVFP+ + S+ VV+ YN  L++ +L+E++D  +V DN +L +I  +  +         N LIS  +S VT  +RFP  + S +  +   LIP P LHF    F P TS
Sbjct:  109 YDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPA-RSSEVVVQSYNTILALRRLIEDSDATVVFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPSFTPFTS 277          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.134e-19
Identity = 44/105 (41.90%), Postives = 65/105 (61.90%), Query Frame = 2
Query:  299 LDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            +DNEA+YDIC R L +  P + +LN LI+  +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S     + A +V E+T   ++  N M   +PR
Sbjct:    1 VDNEAIYDICRRNLGIERPGYTNLNRLIAHVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVTYAPVISAAKAVHEANSVSEITNACFEPNNQMVKCDPR 105          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16
Identity = 56/180 (31.11%), Postives = 88/180 (48.89%), Query Frame = 2
Query:   11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMML-TFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEALY---DICFRTLKLATPTFGDL----NHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 523
            Y  G E  +  L+++ +E + CD L  FQ+ H              +  I + Y  + +L TFS+FPS +  SD VV+PYN  L++ +L++ +D   V  N++L    +I F           DL    N LI+   + V+  LRFPG + S +  +  NLIP P L F     AP +++
Sbjct:  135 YKYGTEEEETLLNLIDREVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSLNRIENILFNNNSNIQHDDNDLFLGANKLIALVSASVSNPLRFPGYMYSSMESIVSNLIPTPDLKFLTSSIAPFSTQ 314          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.609e-15
Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 2
Query:  323 ICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            IC R L +  P++ +LN LIS  +S +T  LRF G LN DL +   NL+P+PR+HF +V +AP+ S     +  L V E+T   ++  N M   +PR
Sbjct:    1 ICKRNLDIERPSYTNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLAVAEVTSACFEPANQMVKCDPR 97          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB_LYTPI (Tubulin beta chain (Fragment) OS=Lytechinus pictus PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 2
Query:  503 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            FAPLTSRGSQQYRALTV ELTQQM+DAKNMM A +PR
Sbjct:    1 FAPLTSRGSQQYRALTVSELTQQMFDAKNMMAACDPR 37          
The following BLAST results are available for this feature:
BLAST of FC920866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBG_CAEEL9.414e-2431.68Tubulin gamma chain OS=Caenorhabditis elegans GN=t... [more]
TBG_ENTHI5.711e-2133.53Tubulin gamma chain OS=Entamoeba histolytica PE=2 ... [more]
TBE_HUMAN2.170e-2026.64Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBE_MOUSE3.702e-2025.33Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBG_YEAST4.835e-2031.76Tubulin gamma chain OS=Saccharomyces cerevisiae GN... [more]
TBAA_PNECA3.134e-1941.90Tubulin alpha chain (Fragment) OS=Pneumocystis car... [more]
TBG_CANAL9.435e-1631.11Tubulin gamma chain OS=Candida albicans GN=TUB4 PE... [more]
TBA_OCTVU1.609e-1540.21Tubulin alpha chain (Fragment) OS=Octopus vulgaris... [more]
TBB_LYTPI9.139e-1186.49Tubulin beta chain (Fragment) OS=Lytechinus pictus... [more]

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Properties
Property NameValue
Genbank descriptionC32014A06EF RVDevelop1 Citrus clementina cDNA clone C32014A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920866 ID=FC920866; Name=FC920866; organism=Citrus clementina; type=EST; length=634bp
CAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGATTTTCCTCTGGATG
TTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTA
TGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTAT
TTCCAAGATCAGGGAGGAGTATCCAGATCGCATGATGTTGACATTTTCCG
TCTTCCCGTCTCCTAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCT
ACCCTCTCAGTACATCAGCTTGTTGAGAATGCCGATGAATGTATGGTGCT
AGATAATGAAGCTCTATATGATATTTGCTTCAGAACTCTCAAGCTCGCCA
CCCCTACTTTTGGTGATCTTAACCATCTTATCTCTGCTACCATGAGTGGC
GTCACATGCTGTCTTCGATTCCCCGGACAGCTGAACTCTGACCTCAGGAA
GCTTGCTGTTAACCTTATCCCTTTCCCGCGTCTCCATTTCTTCATGGTTG
GGTTTGCACCCTTGACATCACGAGGATCACAGCAGTATCGTGCCCTTACT
GTGCCAGAACTAACCCAGCAGATGTGGGATGCTAAGAACATGATGTGTGC
TGCTGAACCACGCACGGTCGTTACCTAACTGCTT
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