FC920866
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 9.414e-24 Identity = 64/202 (31.68%), Postives = 103/202 (50.99%), Query Frame = 2 Query: 11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVS-DTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613 Y +G E+ + +D++ +EAEN + L G H + ++RE +P +++ T+SVF + S D VV PYN LS+ +L+EN D +VLDN AL+ + K TPTF +N L++ MS T RF + +R L +L PFP +HF +P+ R +V ++T+ + +MM + R Sbjct: 110 YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALHRLAAGKFKTDTPTFDHINSLVARIMSTSTAPYRFNSAMCPSIRYL--DLAPFPPMHFIQSAISPVVDPNENFTRKTSVADVTRFLLKPTSMMVSTASR 309
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 5.711e-21 Identity = 57/170 (33.53%), Postives = 85/170 (50.00%), Query Frame = 2 Query: 5 GHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPL 514 G+YT E + +++ +E E+CD L+GF CH + I E+YP ++ +FSV D VV PYN+ L++ +L+ +V DN AL DI + T D+N +IS++MS T LRFP L + L L ++L P HF M + PL Sbjct: 105 GYYT--TEKMSEIEEIIDREVEHCDSLEGFFFCHSICGGTGSGLGSKIMEMISEKYPKNILTSFSVMVKEN-PDVVVSPYNSILTLRRLITECQSVVVFDNSALADITHTQFGVDEATVFDMNSIISSSMSAFTANLRFPSTLYNSLNSLMIHLCPSRFSHFLMTSYTPL 271
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.170e-20 Identity = 61/229 (26.64%), Postives = 110/229 (48.03%), Query Frame = 2 Query: 5 GHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFR------------TLK---LATPTFGDL-----------NHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613 GH G+ D L+ RK AE+CDCLQ F + H + + +E+P+ S++PS + D + PYN+ L++ +L E+AD + +DN++L+DI + T+K L T + G L N++++ + +T RF G LN DL ++++NL+PFP+LH+ + PL + + ++ + + + A+P+ Sbjct: 112 GHKVFGSLYQDQILEKFRKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTSIYPSGE-DDVITSPYNSILAMKELNEHADCVLPIDNQSLFDIISKIDLMVNSGKLGTTVKPKSLVTSSSGALKKQHKKPFDAMNNIVANLLLNLTSSARFEGSLNMDLNEISMNLVPFPQLHYLVSSLTPLYTLTDVNIPPRRLDQMFSDAFSKDHQLLRADPK 339
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.702e-20 Identity = 58/229 (25.33%), Postives = 105/229 (45.85%), Query Frame = 2 Query: 5 GHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDI---------------CFRTLKLATPTFGD-----------LNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613 GH G + L+ +RK AE CDCLQ F + H + + +E+P+ +V+PS + D + PYN+ L++ +L E+AD + +DN++L+DI + L T G +N++++ + +T RF G LN DL ++++NL+PFP+LH+ + PL + + ++ + + + A+PR Sbjct: 112 GHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVITSPYNSMLAMKELNEHADCVLPIDNQSLFDIISKIDLVVNSGKLGSAVKPKSLITSNMGAVKKHHKKPFDAMNNIVANLLLSLTSSARFEGSLNMDLNEISMNLVPFPKLHYLVSSLTPLYTLADVNIPPRRLDQMFSDAFSKDHQLIQADPR 339
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 4.835e-20 Identity = 54/170 (31.76%), Postives = 87/170 (51.18%), Query Frame = 2 Query: 11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTS 520 Y G D L+ + KE ++ D +GFQ+ H + + + YP +++ T+SVFP+ + S+ VV+ YN L++ +L+E++D +V DN +L +I + + N LIS +S VT +RFP + S + + LIP P LHF F P TS Sbjct: 109 YDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPA-RSSEVVVQSYNTILALRRLIEDSDATVVFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPSFTPFTS 277
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.134e-19 Identity = 44/105 (41.90%), Postives = 65/105 (61.90%), Query Frame = 2 Query: 299 LDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613 +DNEA+YDIC R L + P + +LN LI+ +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + A +V E+T ++ N M +PR Sbjct: 1 VDNEAIYDICRRNLGIERPGYTNLNRLIAHVVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVTYAPVISAAKAVHEANSVSEITNACFEPNNQMVKCDPR 105
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.435e-16 Identity = 56/180 (31.11%), Postives = 88/180 (48.89%), Query Frame = 2 Query: 11 YTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMML-TFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEALY---DICFRTLKLATPTFGDL----NHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR 523 Y G E + L+++ +E + CD L FQ+ H + I + Y + +L TFS+FPS + SD VV+PYN L++ +L++ +D V N++L +I F DL N LI+ + V+ LRFPG + S + + NLIP P L F AP +++ Sbjct: 135 YKYGTEEEETLLNLIDREVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSLNRIENILFNNNSNIQHDDNDLFLGANKLIALVSASVSNPLRFPGYMYSSMESIVSNLIPTPDLKFLTSSIAPFSTQ 314
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBA_OCTVU (Tubulin alpha chain (Fragment) OS=Octopus vulgaris PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.609e-15 Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 2 Query: 323 ICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613 IC R L + P++ +LN LIS +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L V E+T ++ N M +PR Sbjct: 1 ICKRNLDIERPSYTNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLAVAEVTSACFEPANQMVKCDPR 97
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB_LYTPI (Tubulin beta chain (Fragment) OS=Lytechinus pictus PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11 Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 2 Query: 503 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613 FAPLTSRGSQQYRALTV ELTQQM+DAKNMM A +PR Sbjct: 1 FAPLTSRGSQQYRALTVSELTQQMFDAKNMMAACDPR 37 The following BLAST results are available for this feature:
BLAST of FC920866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 419
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920866 ID=FC920866; Name=FC920866; organism=Citrus clementina; type=EST; length=634bpback to top |