FC920866

Overview
NameFC920866
Unique NameFC920866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11184 contig Ccv1_Contig11184:390..1023. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB_EUPOC (Tubulin beta chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.019e-94
Identity = 170/204 (83.33%), Postives = 180/204 (88.24%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAELID  LDVVRKEAE CDCLQGFQ+ H              ISKIREEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE MV+DNEALYDICFRTLKL TPT+GDLNHL+SA +SGVT CLRFPGQLNSDLRKLAVNLIPFPRLHFFM+GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM A++PR
Sbjct:  103 KGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVIDNEALYDICFRTLKLTTPTYGDLNHLVSACISGVTACLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMSASDPR 306          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB_PLAFA (Tubulin beta chain OS=Plasmodium falciparum PE=3 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 1.739e-94
Identity = 169/204 (82.84%), Postives = 178/204 (87.25%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAELID  LDV+RKEAE CDCLQGFQ+ H              ISKIREEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE  V+DNEALYDICFRTLKL TPT+GDLNHL+SA MSGVTC LRFPGQLNSDLRKLAVNLIPFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMMC ++PR
Sbjct:  103 KGHYTEGAELIDAVLDVLRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMYGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCTSDPR 306          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB_EUPFO (Tubulin beta chain OS=Euplotes focardii PE=3 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 5.059e-94
Identity = 168/204 (82.35%), Postives = 179/204 (87.75%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAELID  LDVVRKEAE CDCLQGFQ+ H              ISKIRE+YPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE M +DNEALYDICFRTLK  TPT+GDLNHL+SA +SGVT CLRFPGQLNSDLRKLAVNLIPFPRLHFFM+GFAPLTSRGSQQYRALTVPELTQQM+DAKNMMCA++PR
Sbjct:  103 KGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREKYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRTLKPTTPTYGDLNHLVSAVISGVTSCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCASDPR 306          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB_BABBO (Tubulin beta chain OS=Babesia bovis PE=3 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 8.629e-94
Identity = 168/204 (82.35%), Postives = 179/204 (87.75%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAELID  LDVVRKEAE CDCLQGFQ+ H              ISKIREEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE  V+DNEALYDICFRTLKL TPT+GDLNHL+SA MSGVTC LRFPGQLNSDLRKLAVNLIPFPRLHFFM+GFAPLTSRGSQQ+RAL+V ELTQQM+DAKNMMCA++PR
Sbjct:  103 KGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQHRALSVAELTQQMFDAKNMMCASDPR 306          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB_THAWE (Tubulin beta chain OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 5.593e-93
Identity = 163/204 (79.90%), Postives = 177/204 (86.76%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAELID  LDVVRKEAE+CDC+QGFQ+ H              ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVENAD+C  LDNEALYDICFRTLKL TPT+GDLNHLI+A + G TCCLRFPGQLN DLRKLAVN++PFPRLHFFMVG+APLTSRGSQQYRALTVPELTQQ +DAKNMMCAA+PR
Sbjct:  103 KGHYTEGAELIDSVLDVVRKEAESCDCMQGFQLTHSMGGGTGAGMGTLLISKIREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFALDNEALYDICFRTLKLTTPTYGDLNHLIAAAVCGTTCCLRFPGQLNCDLRKLAVNMVPFPRLHFFMVGYAPLTSRGSQQYRALTVPELTQQCFDAKNMMCAADPR 306          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB_TRYBR (Tubulin beta chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.246e-92
Identity = 162/204 (79.41%), Postives = 178/204 (87.25%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAELID  LDV  KEAE+CDCLQGFQ+CH              ISK+RE+YPDR+M+TFS+ PSPKVSDTVVEPYN TLSVHQLVEN+DE M +DNEALYDICFRTLKL TPTFGDLNHL+SA +SGVTCCLRFPGQLNSDLRKLAVNL+PFPRLHFFM+GFAPLTSRGSQQYR L+VPELTQQM+DAKNMM AA+PR
Sbjct:  103 KGHYTEGAELIDSVLDVCCKEAESCDCLQGFQICHSLGGGTGSGMGTLLISKLREQYPDRIMMTFSIIPSPKVSDTVVEPYNTTLSVHQLVENSDESMCIDNEALYDICFRTLKLTTPTFGDLNHLVSAVVSGVTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMQAADPR 306          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB4_OOMCK (Tubulin beta-4 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB4 PE=3 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 1.627e-92
Identity = 168/204 (82.35%), Postives = 176/204 (86.27%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAELID  LDVVRKEAE CDCLQGFQV H              ISKIREEYPDR+M+TFSV PSPKVSDTVVEPYNATLSVHQLVENADE MVLDNEALYDICFRTLKL TPT+GDLNHL+   MSGVT  LRFPGQLN+DLRKLAVNLIPFPRLHFFM+GFAPLTSRGSQQYRALTVPELT Q +DAKNMMCAA+PR
Sbjct:  103 KGHYTEGAELIDSVLDVVRKEAEQCDCLQGFQVTHSLGGGTGSGMGTLLISKIREEYPDRVMMTFSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMVLDNEALYDICFRTLKLTTPTYGDLNHLVCVCMSGVTSSLRFPGQLNADLRKLAVNLIPFPRLHFFMLGFAPLTSRGSQQYRALTVPELTSQCFDAKNMMCAADPR 306          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB1_PHYPO (Tubulin beta-1 chain OS=Physarum polycephalum GN=BETA PE=1 SV=4)

HSP 1 Score: 338.576 bits (867), Expect = 1.627e-92
Identity = 166/204 (81.37%), Postives = 177/204 (86.76%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAELID  LDVVRKEAE+CDCLQGFQ+ H              ISKIREEYPDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVENADE M +DNEALYDI FRTLKL TPT+GDLNHL+SA MSG+TCCLRFPGQLNSDLRKLAVNLIPFPRLHFF+VGFAPLTSRGS  YR+LTVPELTQQM+DAKNMM A++PR
Sbjct:  103 KGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMCTFSVVPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDISFRTLKLTTPTYGDLNHLVSAVMSGITCCLRFPGQLNSDLRKLAVNLIPFPRLHFFLVGFAPLTSRGSVGYRSLTVPELTQQMFDAKNMMAASDPR 306          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB_TRYCR (Tubulin beta chain OS=Trypanosoma cruzi PE=3 SV=2)

HSP 1 Score: 337.421 bits (864), Expect = 3.625e-92
Identity = 160/203 (78.82%), Postives = 178/203 (87.68%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEP 610
            KGHYTEGAELID  LDV RKEAE+CDCLQGFQ+CH              ISK+REEYPDR+M+TFS+ PSPKVSDTVVEPYN TLSVHQLVEN+DE M +DNEALYDICFRTLKL TPTFGDLNHL+SA +SGVTCCLRFPGQLNSDLRKLAVNL+PFPRLHFFM+GFAPL+SRGSQQYR L+VP++TQQM+DAKNMM AA+P
Sbjct:  103 KGHYTEGAELIDSVLDVCRKEAESCDCLQGFQICHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSIIPSPKVSDTVVEPYNTTLSVHQLVENSDESMCIDNEALYDICFRTLKLTTPTFGDLNHLVSAVVSGVTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLSSRGSQQYRGLSVPDVTQQMFDAKNMMQAADP 305          
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB2C_RAT (Tubulin beta-2C chain OS=Rattus norvegicus GN=Tubb2c PE=1 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 8.076e-92
Identity = 164/204 (80.39%), Postives = 176/204 (86.27%), Query Frame = 2
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAEL+D  LDVVRKEAE+CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDICFRTLKL TPT+GDLNHL+SATMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM A +PR
Sbjct:  103 KGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTACLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPR 306          
The following BLAST results are available for this feature:
BLAST of FC920866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBB_EUPOC1.019e-9483.33Tubulin beta chain OS=Euplotes octocarinatus PE=3 ... [more]
TBB_PLAFA1.739e-9482.84Tubulin beta chain OS=Plasmodium falciparum PE=3 S... [more]
TBB_EUPFO5.059e-9482.35Tubulin beta chain OS=Euplotes focardii PE=3 SV=1[more]
TBB_BABBO8.629e-9482.35Tubulin beta chain OS=Babesia bovis PE=3 SV=1[more]
TBB_THAWE5.593e-9379.90Tubulin beta chain OS=Thalassiosira weissflogii PE... [more]
TBB_TRYBR1.246e-9279.41Tubulin beta chain OS=Trypanosoma brucei rhodesien... [more]
TBB4_OOMCK1.627e-9282.35Tubulin beta-4 chain OS=Oomycete-like sp. (strain ... [more]
TBB1_PHYPO1.627e-9281.37Tubulin beta-1 chain OS=Physarum polycephalum GN=B... [more]
TBB_TRYCR3.625e-9278.82Tubulin beta chain OS=Trypanosoma cruzi PE=3 SV=2[more]
TBB2C_RAT8.076e-9280.39Tubulin beta-2C chain OS=Rattus norvegicus GN=Tubb... [more]

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Properties
Property NameValue
Genbank descriptionC32014A06EF RVDevelop1 Citrus clementina cDNA clone C32014A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920866 ID=FC920866; Name=FC920866; organism=Citrus clementina; type=EST; length=634bp
CAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGATTTTCCTCTGGATG
TTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTA
TGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTAT
TTCCAAGATCAGGGAGGAGTATCCAGATCGCATGATGTTGACATTTTCCG
TCTTCCCGTCTCCTAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCT
ACCCTCTCAGTACATCAGCTTGTTGAGAATGCCGATGAATGTATGGTGCT
AGATAATGAAGCTCTATATGATATTTGCTTCAGAACTCTCAAGCTCGCCA
CCCCTACTTTTGGTGATCTTAACCATCTTATCTCTGCTACCATGAGTGGC
GTCACATGCTGTCTTCGATTCCCCGGACAGCTGAACTCTGACCTCAGGAA
GCTTGCTGTTAACCTTATCCCTTTCCCGCGTCTCCATTTCTTCATGGTTG
GGTTTGCACCCTTGACATCACGAGGATCACAGCAGTATCGTGCCCTTACT
GTGCCAGAACTAACCCAGCAGATGTGGGATGCTAAGAACATGATGTGTGC
TGCTGAACCACGCACGGTCGTTACCTAACTGCTT
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