FC920867

Overview
NameFC920867
Unique NameFC920867
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14169 contig Ccv1_Contig14169:3..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.123e-65
Identity = 132/204 (64.71%), Postives = 149/204 (73.04%), Query Frame = 1
Query:   64 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDP 669
            +T A+  S+ AGQ      +    ++GV   GR++MR+T   T  S   WYGPDR KYLGPFS + PSYLTGEF G        LSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+LMG VEGYRI                +FDPLGLADDP
Sbjct:    4 STMALSSSSLAGQAMKLAPS--TPELGV---GRVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDP 194          
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.773e-65
Identity = 129/206 (62.62%), Postives = 142/206 (68.93%), Query Frame = 1
Query:   64 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSTPQ---SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDP 669
            AT AI   A  G+ A    + F         GRITMR+T  K  P    S WYG DR  YLGP S   PSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIH RWA+   LGCVFPE+L++NGVKFGE VWFKAG+QIFSEGGL + GNP+L+HAQSILAIWACQVVLMG VEGY +                +FDPLGL DDP
Sbjct:    4 ATMAITSRALVGKPAAGTRDVFGE-------GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDP 202          
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.376e-64
Identity = 117/144 (81.25%), Postives = 124/144 (86.11%), Query Frame = 1
Query:  238 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDP 669
            PFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS WAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDP 144          
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.057e-60
Identity = 109/156 (69.87%), Postives = 128/156 (82.05%), Query Frame = 1
Query:  205 WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDP 669
            +YGP+R K+LGP+SE  TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGC  PE+L+K+G KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ+I+A  A QV+LMG +EGYR+                +FDPLGLADDP
Sbjct:   36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDP 191          
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.984e-60
Identity = 112/156 (71.79%), Postives = 124/156 (79.49%), Query Frame = 1
Query:  205 WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDP 669
            WYGPDR K+LGPFS  TP+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH+RWA+LGALG + PE+LS   GVKFGE VWFKAGAQIFSEGGLDYLG+P LIHAQ+I+A  A QVVLMG +EGYR+                +FDPLGLADDP
Sbjct:   39 WYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDP 194          
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.386e-58
Identity = 109/149 (73.15%), Postives = 118/149 (79.19%), Query Frame = 1
Query:  220 RPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADD 666
            R KYLGPFS + PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIHSR AM  ALGC+FPE+LS  G  FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIW  +V+LMG VEGYRI                +FD LGLA+D
Sbjct:   58 RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRI-ARGPLGEVTDPLYPGSFDSLGLAED 205          

HSP 2 Score: 31.187 bits (69), Expect = 1.386e-58
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 3
Query:  669 DQFAELKVKELKNGRL 716
            + FAELKVKELKNGRL
Sbjct:  207 EAFAELKVKELKNGRL 222          
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.968e-57
Identity = 108/176 (61.36%), Postives = 131/176 (74.43%), Query Frame = 1
Query:  160 RITMRRTVKSTPQSI--WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA--FDPLGLADDP 669
            R T ++ + + P++   +YGPDR K+LGPFSE  TP YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH+RWA+LGALG + PE+LS+  GV+FGE VWFKAGAQIF++GGL+YLGN +LIHAQSI+A  A QVVLMG  E YR                    FDPLGLADDP
Sbjct:   16 RQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDP 191          

HSP 2 Score: 34.6538 bits (78), Expect = 1.968e-57
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  666 PDQFAELKVKELKNGRL 716
            PD FAELKVKE+KNGRL
Sbjct:  191 PDTFAELKVKEIKNGRL 207          
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.423e-46
Identity = 96/163 (58.90%), Postives = 116/163 (71.17%), Query Frame = 1
Query:  187 STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS-KNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDP 669
            S+  + +YGPD          Q P   TGEFPGDYGWDTAGLSADPETF + RELE+IH+R  +LGALG V PE+L+ ++G+KFG+ A+WFKAGA IF +GGL+YLGNP+LIHAQ+I+A  A QVVLMG VEGYR+                AFDPLGLADDP
Sbjct:   51 SSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDP 212          
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.095e-32
Identity = 67/88 (76.14%), Postives = 70/88 (79.55%), Query Frame = 1
Query:  406 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDP 669
            E+L KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG +EGYR+                AFDPLGLADDP
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDP 88          
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.342e-29
Identity = 73/159 (45.91%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  205 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDP 669
            WYGPDR  +L        + P YL GE  GDYG+D  GL   PE FAK +  E+IH+RWAMLGA G + PE L+K G   G EAVWFK GA +     L+Y G    I    +LA+ A +VVL+G  E YRI                 FDPLGLA DP
Sbjct:   62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRI--TNGLDFEDKLHPGGPFDPLGLAKDP 215          

HSP 2 Score: 28.8758 bits (63), Expect = 6.342e-29
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 3
Query:  666 PDQFAELKVKELKNGRL 716
            P+Q A LKVKE+KNGRL
Sbjct:  215 PEQGALLKVKEIKNGRL 231          
The following BLAST results are available for this feature:
BLAST of FC920867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB22_SOYBN2.123e-6564.71Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB48_MAIZE2.773e-6562.62Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_CUCSA1.376e-6481.25Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_CHLRE2.057e-6069.87Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO5.984e-6071.79Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO1.386e-5873.15Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_DUNTE1.968e-5761.36Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA6.423e-4658.90Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY3.095e-3276.14Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH6.342e-2945.91Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionC32014A07EF RVDevelop1 Citrus clementina cDNA clone C32014A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920867 ID=FC920867; Name=FC920867; organism=Citrus clementina; type=EST; length=717bp
GAAAAAGAGTGCGAAAAGAAGTTCTCAGCAACAAAAGGAAAAGCTTTCGC
ATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCC
AGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCT
GACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAG
CATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGC
AAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGAT
ACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCT
AGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCT
TCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGG
TTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGG
CAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCC
AGGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTCCT
CTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCACT
TGGTTTGGCTGATGACCCGATCAATTTGCTGAGTTGAAGGTCAAGGAGCT
CAAGAATGGCCGTCTGG
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