FC920867

Overview
NameFC920867
Unique NameFC920867
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14169 contig Ccv1_Contig14169:3..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 55/181 (30.39%), Postives = 86/181 (47.51%), Query Frame = 1
Query:   64 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS-------IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 585
            A+S I   AF+  ++ R  +          GGR        +TP +       +   PDRP +        P +L G  PGD+G+D  GL++DPE+   N++ E++H RWAMLGA G   PE+L+K G+      W+ AG Q       +Y  +           ++  ++VL+G+ EG R
Sbjct:    6 ASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRR 168          
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 1
Query:  214 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 585
            PDRP +        P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+K GV      W+ AG Q       +Y  +           ++  ++VL+G+ EG R
Sbjct:   63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRR 168          
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.643e-14
Identity = 34/62 (54.84%), Postives = 39/62 (62.90%), Query Frame = 1
Query:  487 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLGLADDP 669
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPL    DP
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDP 62          

HSP 2 Score: 33.113 bits (74), Expect = 3.643e-14
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  666 PDQFAELKVKELKNGRL 716
            P+ FAELKVKE+KNGRL
Sbjct:   62 PEAFAELKVKEIKNGRL 78          
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.563e-14
Identity = 69/189 (36.51%), Postives = 93/189 (49.21%), Query Frame = 1
Query:   61 MATSAIQQSA---FAGQTALRQS---NEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 585
            MAT A+  S+   FA + A+RQS         VG +  G +       +TP     G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R
Sbjct:    1 MATQALVSSSSLTFAAE-AVRQSFRARSLPSSVGCSRKGLVR----AAATPPVKQGGVDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRR 172          

HSP 2 Score: 27.335 bits (59), Expect = 7.563e-14
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 3
Query:  639 F*PTWFG**PDQFAELKVKELKNGRL 716
            F P  FG       ELK+KE+KNGRL
Sbjct:  208 FNPLGFGKDEKSLKELKLKEVKNGRL 233          
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 50/139 (35.97%), Postives = 64/139 (46.04%), Query Frame = 1
Query:  256 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDP 669
            PSYL G  PGD+G+D+ GL   P    + +E E+IH RWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + + FVE  R                 AFDPLG + DP
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDP 182          
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 55/172 (31.98%), Postives = 77/172 (44.77%), Query Frame = 1
Query:  157 GRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDP 669
            GR+TM         + W+ P +P+         P++L G  PGD+G+D  GL+  PE F + +E E+ H RWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + + F E  R                 AFDPLG + DP
Sbjct:   40 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR---TMEKDPEKKKYPGGAFDPLGFSKDP 181          
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 6.445e-12
Identity = 66/191 (34.55%), Postives = 93/191 (48.69%), Query Frame = 1
Query:   61 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK--------STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 585
            MAT A+  S+     ++  S E  R++    G RI+   T K        STP  +  G +R  +    S+Q+ SYL G  PGD+G+D  GLS DPE    F + + L   EVI+ R+AMLGA G + PEIL K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R
Sbjct:    1 MATQALISSS-----SISTSAEAARQI---IGSRISQSVTRKASFVVRAASTPP-VKQGANRQLWFA--SKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRR 170          

HSP 2 Score: 27.7202 bits (60), Expect = 6.445e-12
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 3
Query:  639 F*PTWFG**PDQFAELKVKELKNGRL 716
            F P  FG       ELK+KE+KNGRL
Sbjct:  206 FNPLGFGKDEKSMKELKLKEIKNGRL 231          
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.352e-11
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 1
Query:  250 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQI 471
            + P+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PE+L       G+  WF+AG  +
Sbjct:  195 EPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261          
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 33/54 (61.11%), Postives = 37/54 (68.52%), Query Frame = 1
Query:  508 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDP 669
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDP 205          
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 33/54 (61.11%), Postives = 37/54 (68.52%), Query Frame = 1
Query:  508 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDP 669
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDP 205          
The following BLAST results are available for this feature:
BLAST of FC920867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB12_SOLLC4.489e-1530.39Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY5.863e-1537.10Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_RAPSA3.643e-1454.84Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB23_PEA7.563e-1436.51Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB11_SOLLC2.085e-1235.97Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU3.557e-1231.98Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB13_SOLLC6.445e-1234.55Chlorophyll a-b binding protein 8, chloroplastic O... [more]
LH18_EUGGR1.352e-1143.24Light-harvesting complex I LH38 proteins (Fragment... [more]
CB2F_SOLLC8.761e-1161.11Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC8.761e-1161.11Chlorophyll a-b binding protein 3A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC32014A07EF RVDevelop1 Citrus clementina cDNA clone C32014A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920867 ID=FC920867; Name=FC920867; organism=Citrus clementina; type=EST; length=717bp
GAAAAAGAGTGCGAAAAGAAGTTCTCAGCAACAAAAGGAAAAGCTTTCGC
ATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCC
AGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCT
GACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAG
CATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGC
AAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGAT
ACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCT
AGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCT
TCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGG
TTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGG
CAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCC
AGGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTCCT
CTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCACT
TGGTTTGGCTGATGACCCGATCAATTTGCTGAGTTGAAGGTCAAGGAGCT
CAAGAATGGCCGTCTGG
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