FC920867

Overview
NameFC920867
Unique NameFC920867
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14169 contig Ccv1_Contig14169:3..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 33/54 (61.11%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:  508 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDP 669
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDP 54
[Close]
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 33/54 (61.11%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:  508 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDP 669
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDP 203
[Close]
BLAST of FC920867 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 33/54 (61.11%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:  508 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDP 669
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDP 203
The following BLAST results are available for this feature:
BLAST of FC920867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
CB2D_SOLLC8.761e-1161.11Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC8.761e-1161.11Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC8.761e-1161.11Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC32014A07EF RVDevelop1 Citrus clementina cDNA clone C32014A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920867 ID=FC920867; Name=FC920867; organism=Citrus clementina; type=EST; length=717bp
GAAAAAGAGTGCGAAAAGAAGTTCTCAGCAACAAAAGGAAAAGCTTTCGC
ATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCC
AGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCT
GACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAG
CATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGC
AAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGAT
ACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCT
AGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCT
TCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGG
TTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTGG
CAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGCC
AGGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTCCT
CTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCACT
TGGTTTGGCTGATGACCCGATCAATTTGCTGAGTTGAAGGTCAAGGAGCT
CAAGAATGGCCGTCTGG
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