FC920868

Overview
NameFC920868
Unique NameFC920868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9492 contig Ccv1_Contig9492:38..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PER3_ARATH (Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.081e-32
Identity = 73/182 (40.11%), Postives = 109/182 (59.89%), Query Frame = 3
Query:  117 LVMNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 662
            L MNFY ++CP AE I+++ V        + A + +R  FHDC V+ CD S+L++ST    +E++   +  +R F +I+ IK  +E +CPG+VSCADI+ L+ RD VV  GGP   + TGRRDGR S A      +P    +++ +   FA  G+D   LV L G+H++G +HC    +RLY
Sbjct:   26 LQMNFYANSCPNAEKIVQDFVSNHVSNAPSLAAALIRMHFHDCFVRGCDGSVLINSTSGN-AERDATPNLTVRGFGFIDAIKSVLEAQCPGIVSCADIIALASRDAVVFTGGPNWSVPTGRRDGRISNAAEALANIPPPTSNITNLQTLFANQGLDLKDLVLLSGAHTIGVSHCSSFTNRLY 206          
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PER72_ARATH (Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.411e-32
Identity = 74/185 (40.00%), Postives = 104/185 (56.22%), Query Frame = 3
Query:  117 LVMNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGM-RNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYQK 668
            L   FY  +CP+A++I++  V   ++       S LR  FHDC V+ CDAS+LLDS+   +SEK  + +    R F  IE IK A+E+ECP  VSCADIL L+ RD  V  GGP   +  GRRD R +        +P  N++   +L +F   G+D   LV+L GSH++G + C     RLY +
Sbjct:   33 LFPQFYDQSCPKAQEIVQSIVAKAFEHDPRMPASLLRLHFHDCFVKGCDASILLDSSGTIISEKRSNPNRNSARGFELIEEIKHALEQECPETVSCADILALAARDSTVITGGPSWEVPLGRRDARGASLSGSNNDIPAPNNTFQTILTKFKRQGLDLVDLVSLSGSHTIGNSRCTSFRQRLYNQ 217          
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PER55_ARATH (Peroxidase 55 OS=Arabidopsis thaliana GN=PER55 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.843e-32
Identity = 75/189 (39.68%), Postives = 113/189 (59.79%), Query Frame = 3
Query:  102 EEDPGLVMNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD--RSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 662
            E +  L  N+Y  TCP  E I+K+ V   +K+   TA + LR  FHDC V+ CDAS+ + S  +  +EK+ D  +S     F  +   K AVE +CPGVVSCADIL L+ RD VV +GGP   ++ GRRDG  S+A  +   LP+    +  +++ FA+ G+    ++AL G+H++G +HC +  +RL+
Sbjct:   27 ESNAQLSENYYASTCPSVELIVKQAVTTKFKQTVTTAPATLRMFFHDCFVEGCDASVFIASENED-AEKDADDNKSLAGDGFDTVIKAKTAVESQCPGVVSCADILALAARDVVVLVGGPEFKVELGRRDGLVSKASRVTGKLPEPGLDVRGLVQIFASNGLSLTDMIALSGAHTIGSSHCNRFANRLH 214          
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PER28_ARATH (Peroxidase 28 OS=Arabidopsis thaliana GN=PER28 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.843e-32
Identity = 76/181 (41.99%), Postives = 102/181 (56.35%), Query Frame = 3
Query:  117 LVMNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRL 659
            L   FY ++CP AE I++  V+  + R  +   +  R  FHDC VQ CDASLL+D T   LSEK    +F +R F  I+ IK A+E +CP  VSC+DI+ L+ RD V   GGP   + TGRRDG  S  E   + LP    S+  +L  F   G++    VALLG+H+VG   C   V R+
Sbjct:   23 LKFKFYSESCPNAETIVENLVRQQFARDPSITAALTRMHFHDCFVQGCDASLLIDPTTSQLSEKNAGPNFSVRGFELIDEIKTALEAQCPSTVSCSDIVTLATRDAVFLGGGPSYVVPTGRRDGFVSNPEDANEILPPPFISVEGMLSFFGNKGMNVFDSVALLGAHTVGIASCGNFVDRV 203          
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PER26_ARATH (Probable peroxidase 26 OS=Arabidopsis thaliana GN=PER26 PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.407e-32
Identity = 78/184 (42.39%), Postives = 110/184 (59.78%), Query Frame = 3
Query:  117 LVMNFYK--DTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 662
            L  ++YK  +TC  AE+ ++ QV++ YK  K+ A   LR ++ DC V  CDAS+LL+      SEK   ++ G+  F  I+ IK  +E+ CPGVVSCADIL L+ RD V   G P  P+ TGRRDG  S  + ++  LP  + S    +  F + G++   +  LLGSHS+GRTHC  +V RLY
Sbjct:   35 LTWHYYKVYNTCENAENFVRHQVEIFYKNDKSIAPKLLRLLYSDCFVSGCDASVLLEGPN---SEKMAPQNRGLGGFVLIDKIKIVLEQRCPGVVSCADILNLATRDAVHLAGAPSYPVFTGRRDGLTSDKQTVD--LPSPSISWDQAMSYFKSRGLNVLDMATLLGSHSMGRTHCSYVVDRLY 213          
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PER47_ARATH (Peroxidase 47 OS=Arabidopsis thaliana GN=PER47 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.144e-32
Identity = 70/182 (38.46%), Postives = 103/182 (56.59%), Query Frame = 3
Query:  114 GLVMNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRL 659
            GL M +Y  +CP AE I+K  V    +     A   +R +FHDC ++ CDAS+LLDST+   +EK+   +  +R +  I++ KE +E  CPGVVSCADI+ ++ RD V   GGPY  +  GR DG++S+ E     LP    + S +++ F   G     +VAL G+H++G   C     RL
Sbjct:   25 GLSMTYYMMSCPFAEQIVKNSVNNALQADPTLAAGLIRMLFHDCFIEGCDASILLDSTKDNTAEKDSPANLSLRGYEIIDDAKEKIENRCPGVVSCADIVAMAARDAVFWAGGPYYDIPKGRFDGKRSKIEDTRN-LPSPFLNASQLIQTFGQRGFTPQDVVALSGAHTLGVARCSSFKARL 205          
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PER27_ARATH (Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.144e-32
Identity = 77/183 (42.08%), Postives = 105/183 (57.38%), Query Frame = 3
Query:  114 GLVMNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 662
            GL + FY  TCPQ E I+K+ V     +        LR  FHDC V+ CD S+LLD       EK    +  +R F  I++ K A+E+ CPG+VSC+DIL L  RD +VAL GP   ++TGRRDGR S   I E  LP   D+++ ++  F + G++   LV L G H++G  HC  L +RLY
Sbjct:   25 GLKVGFYSKTCPQLEGIVKKVVFDAMNKAPTLGAPLLRMFFHDCFVRGCDGSVLLDKPNNQ-GEKSAVPNLSLRGFGIIDDSKAALEKVCPGIVSCSDILALVARDAMVALEGPSWEVETGRRDGRVS--NINEVNLPSPFDNITKLISDFRSKGLNEKDLVILSGGHTIGMGHCPLLTNRLY 204          
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PER20_ARATH (Peroxidase 20 OS=Arabidopsis thaliana GN=PER20 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.106e-32
Identity = 72/184 (39.13%), Postives = 106/184 (57.61%), Query Frame = 3
Query:  117 LVMNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFG-MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYQ 665
            L+  FYK++CP AE+I+K  +++   +    A S LR  FHDC V  CDAS+LLD+    LSEK+   +   +R F  I+ IK  +E  CP  VSC+DIL L+ RD V   GGP+  +  GRRD  K+      Q++P  N S+  ++  F   G++   L+AL G+H++G+  CV    R+ Q
Sbjct:   30 LLKGFYKESCPLAEEIVKHNIEVAVLKDPRMAASLLRLQFHDCFVLGCDASVLLDTHGDMLSEKQATPNLNSLRGFEVIDYIKYLLEEACPLTVSCSDILALAARDSVFLRGGPWWEVLLGRRDSLKASFAGANQFIPAPNSSLDSLIINFKQQGLNIQDLIALSGAHTIGKARCVSFKQRIVQ 213          
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PERX_NICSY (Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.363e-32
Identity = 76/187 (40.64%), Postives = 104/187 (55.61%), Query Frame = 3
Query:  117 LVMNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGM-RNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYQKLT 674
            L   FY +TCP A + I+  V+      +  A S +R  FHDC VQ CDAS+LLD T    SEK    + G  R F  IE+ K  VE+ CPGVVSCADIL ++ RD   A+GGP   +K GRRD   +   + E  LP   D ++ ++  FA+ G+    +VAL G+H++G+  C     R+Y   T
Sbjct:   29 LSATFYDNTCPNALNTIRTSVRQAISSERRMAASLIRLHFHDCFVQGCDASILLDETPSIESEKTALPNLGSARGFGIIEDAKREVEKICPGVVSCADILTVAARDASAAVGGPSWTVKLGRRDSTTASKTLAETDLPGPFDPLNRLISSFASKGLSTRDMVALSGAHTIGQAQCFLFRDRIYSNGT 215          
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PER64_ARATH (Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.363e-32
Identity = 73/180 (40.56%), Postives = 105/180 (58.33%), Query Frame = 3
Query:  126 NFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYQ 665
            ++Y  TCPQA+ I+   VK      +    + LR  FHDC V+ CD S+LLDS  K  +EK+   +  +  F  I+N K+A+E +CPG+VSCADIL L+ RD V   GGP   +  GR+DGR S+A I  + LP    ++S + + F   G+    LVAL G H++G  HC    +RL++
Sbjct:   26 HYYDHTCPQADHIVTNAVKKAMSNDQTVPAALLRMHFHDCFVRGCDGSVLLDSKGKNKAEKDGPPNISLHAFYVIDNAKKALEEQCPGIVSCADILSLAARDAVALSGGPTWAVPKGRKDGRISKA-IETRQLPAPTFNISQLRQNFGQRGLSMHDLVALSGGHTLGFAHCSSFQNRLHK 204          
The following BLAST results are available for this feature:
BLAST of FC920868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER3_ARATH1.081e-3240.11Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 ... [more]
PER72_ARATH1.411e-3240.00Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=... [more]
PER55_ARATH1.843e-3239.68Peroxidase 55 OS=Arabidopsis thaliana GN=PER55 PE=... [more]
PER28_ARATH1.843e-3241.99Peroxidase 28 OS=Arabidopsis thaliana GN=PER28 PE=... [more]
PER26_ARATH2.407e-3242.39Probable peroxidase 26 OS=Arabidopsis thaliana GN=... [more]
PER47_ARATH3.144e-3238.46Peroxidase 47 OS=Arabidopsis thaliana GN=PER47 PE=... [more]
PER27_ARATH3.144e-3242.08Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=... [more]
PER20_ARATH4.106e-3239.13Peroxidase 20 OS=Arabidopsis thaliana GN=PER20 PE=... [more]
PERX_NICSY5.363e-3240.64Lignin-forming anionic peroxidase OS=Nicotiana syl... [more]
PER64_ARATH5.363e-3240.56Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32014A10EF RVDevelop1 Citrus clementina cDNA clone C32014A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920868 ID=FC920868; Name=FC920868; organism=Citrus clementina; type=EST; length=727bp
AGAGAAGAGTAGAAGAGACAATGGGTACGAAAGCTGTCTTCTTGCTTTCA
GCTTTGCTTTCCTTCTCAGCTGTGTCTCTGAGGTCTGCTTTGGCAGAAAA
TGAAGAGGACCCAGGTCTTGTTATGAATTTTTACAAGGATACATGCCCTC
AGGCCGAGGACATTATCAAGGAACAAGTTAAGCTTCTGTACAAGCGCCAC
AAGAACACTGCATTTTCTTGGCTTAGAAACATTTTCCATGACTGTGCTGT
CCAGTCTTGTGATGCTTCACTGCTTCTGGACTCGACAAGAAAGACCTTGT
CTGAGAAGGAAATGGACAGGAGCTTTGGTATGAGGAACTTCAGGTACATT
GAGAACATCAAAGAAGCTGTTGAAAGAGAGTGCCCTGGTGTTGTTTCCTG
TGCTGATATTCTTGTCCTGTCCGGTAGAGATGGCGTTGTTGCGCTTGGAG
GCCCTTACATTCCTCTCAAGACAGGAAGAAGAGATGGTAGAAAAAGCAGA
GCAGAGATACTTGAGCAGTATCTCCCAGATCACAATGACAGCATGTCTGT
TGTTCTTGAGAGGTTTGCAGCCATTGGCATTGACGCCCCTGGACTTGTTG
CTCTGCTAGGATCTCACAGTGTTGGCAGAACTCATTGTGTGAAGCTGGTG
CACCGTCTGTACCAGAAGTTGACCCTGCACTGAACCCTGACACGTTCCGC
ATATGCTCCATAAGTGTCCTGATGCAA
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