FC920868

Overview
NameFC920868
Unique NameFC920868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9492 contig Ccv1_Contig9492:38..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PER2_CUCSA (Peroxidase 2 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.671e-25
Identity = 60/177 (33.90%), Postives = 95/177 (53.67%), Query Frame = 3
Query:  129 FYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRL 659
            FY ++CP   +I++  V+      +      +R  FHDC V  CD S+LL+     +SE     +  +  F  + NIK AVE+ CPGVVSCADIL ++    V   GGP   ++ GRRD R++  +     LP   ++++ +  +F  + +D+  LVAL G+H+ G++ C     RL
Sbjct:    2 FYDESCPDVSNIVRRVVQQALVSDERAGARLIRLHFHDCFVNGCDGSVLLEDQPGVVSELAAPGNANITGFNIVNNIKAAVEKACPGVVSCADILAIASVGSVNLAGGPCWEVQLGRRDSRRANLQGAIDGLPSPFENVTQLKRKFDRVDLDSTDLVALSGAHTFGKSRCQFFDRRL 178          
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PER22_ARATH (Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.182e-25
Identity = 69/181 (38.12%), Postives = 100/181 (55.25%), Query Frame = 3
Query:  126 NFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEM-DRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCVKLVHRLY 662
            +FY  TCP   DII   +    +     A S LR  FHDC V+ CDAS+LLD++    +EK+    +   R F  I+ +K A+ER CPG VSCADIL ++ +  V+  GGP+ P+  GRRD  ++   +    LP    +++ +   FA +G++    LVAL G H+ GR  C  +  RLY
Sbjct:   34 DFYFGTCPFVFDIIGNIIVDELQTDPRIAASLLRLHFHDCFVRGCDASILLDNSTSFRTEKDAAPNANSARGFNVIDRMKVALERACPGRVSCADILTIASQISVLLSGGPWWPVPLGRRDSVEAFFALANTALPSPFFNLTQLKTAFADVGLNRTSDLVALSGGHTFGRAQCQFVTPRLY 214          
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PER1_SORBI (Cationic peroxidase SPC4 (Fragment) OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.862e-25
Identity = 68/176 (38.64%), Postives = 101/176 (57.39%), Query Frame = 3
Query:  111 PGLVMNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMR--NFRYIENIKEAVERECPG-VVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRK--SRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSV 623
            PGL  +FYK +CP+AE I++  V+   +R    A   LR  FHDC VQ CDAS+LLD +     E++   +  +R   F+ I +I + + +EC G VVSC+D+L L+ RD VV  GGP   +  GRRD     ++ ++L   LP    ++  +L   + I +DA  LVAL G H++
Sbjct:   39 PGLSFDFYKRSCPKAESIVRSFVQDAVRRDVGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGEQQAPPNLTLRPTAFKAINDIHDRLHKECGGTVVSCSDVLALAARDSVVVSGGPSYKVPLGRRDSASFATQQDVLSG-LPPPTAAVPALLAVLSKINLDATDLVALSGGHTI 213          
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PER60_ARATH (Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.350e-25
Identity = 67/184 (36.41%), Postives = 101/184 (54.89%), Query Frame = 3
Query:  117 LVMNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGG--PYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 662
            L + FY   C   E+I+ + V   + +  + A + +R  FHDC    CDASLLLD +    SEK+   +  +R +  I++IK AVE+EC  VVSCADI+ L+ RD V    G      + TGR DG+ S A +++  LP    +++    +F    +    +V LLG H++G THC  ++ RLY
Sbjct:   28 LRLGFYSQNCQNVENIVSKVVGEAFIKDSSIAPAMIRLYFHDCFSNGCDASLLLDGSN---SEKKASPNLSVRGYEVIDDIKSAVEKECDRVVSCADIIALATRDLVTLASGGKTRYEIPTGRLDGKISSALLVD--LPSPKMTVAETAAKFDQRKLSLNDMVLLLGGHTIGVTHCSFIMDRLY 206          
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PER32_ARATH (Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 8.293e-25
Identity = 67/184 (36.41%), Postives = 96/184 (52.17%), Query Frame = 3
Query:  117 LVMNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEM-DRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPG-LVALLGSHSVGRTHCVKLVHRLY 662
            L   FY +TCP    I+++ +    +     A S LR  FHDC V  CDAS+LLD+T    +EK+    +   R F  I+ +K AVE  CP  VSCADIL ++ +  V   GGP   +  GRRD  ++   +    LP    ++  +   F  +G+D P  LVAL G H+ G+  C  ++ RLY
Sbjct:   31 LTPTFYDNTCPSVFTIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAAPNANSARGFPVIDRMKAAVETACPRTVSCADILTIAAQQAVNLAGGPSWRVPLGRRDSLQAFFALANTNLPAPFFTLPQLKASFQNVGLDRPSDLVALSGGHTFGKNQCQFIMDRLY 214          
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PER1A_ARMRU (Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.293e-25
Identity = 64/187 (34.22%), Postives = 100/187 (53.48%), Query Frame = 3
Query:  108 DPGLVMNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKE-MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLGSHSVGRTHCVKLVHRLY 662
            D  L   FY ++CP   +I+++ +    +     A S LR  FHDC V  CDAS+LLD+T    +EK+    +   R F  I+ +K AVE  CP  VSCAD+L ++ +  V   GGP   +  GRRD  ++  ++    LP    ++  + + F  +G++ +  LVAL G H+ G+  C  ++ RLY
Sbjct:   29 DAQLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 215          
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PER73_ARATH (Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 66/186 (35.48%), Postives = 102/186 (54.84%), Query Frame = 3
Query:  117 LVMNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRN--FRYIENIKEAVER--ECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 662
            L  NFY ++CP  E I+K+ V+   K+   T  + LR  FHDC V  CDAS+++ ST    +EK+   +  +    F  +   K+A++    C   VSCADIL L+ RD VVA  GP   ++ GR DG  S A  +   LP  N+ ++ + + FA   +    ++AL  +H++G  HC K+ +R+Y
Sbjct:   27 LKTNFYGNSCPNVEQIVKKVVQEKIKQTFVTIPATLRLFFHDCFVNGCDASVMIQSTPTNKAEKDHPDNISLAGDGFDVVIKAKKALDAIPSCKNKVSCADILALATRDVVVAAKGPSYAVELGRFDGLVSTAASVNGNLPGPNNKVTELNKLFAKNKLTQEDMIALSAAHTLGFAHCGKVFNRIY 212          
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PER70_ARATH (Peroxidase 70 OS=Arabidopsis thaliana GN=PER70 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 68/178 (38.20%), Postives = 89/178 (50.00%), Query Frame = 3
Query:  129 FYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 662
            +Y   C   E I++  V+  Y  +   A   LR  FHDC VQ CDAS+LL       SE+    +  +R F  IE  K  +E  CP  VSCADIL L+ RD V   GGP+ P+  GR DGR S A      LP   DS++V   RFA   ++   LV L   H++G   C+    R +
Sbjct:   38 YYGSACWNVESIVRSVVESNYLANPANAPGILRMHFHDCFVQGCDASVLLAGPN---SERTAIPNLSLRGFNVIEEAKTQLEIACPRTVSCADILALAARDFVHLAGGPWWPVPLGRLDGRISLAS--NVILPGPTDSVAVQKLRFAEKNLNTQDLVVLAAGHTIGTAGCIVFRDRFF 210          
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PER35_ARATH (Peroxidase 35 OS=Arabidopsis thaliana GN=PER35 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 65/187 (34.76%), Postives = 99/187 (52.94%), Query Frame = 3
Query:  117 LVMNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRN--FRYIENIKEAVERE--CPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYQ 665
            L   FY  TCP  E I++  V+   K+      + LR  FHDC V  CDAS+++ ST K  +EK+   +  +    F  +   K+A++    C   VSCADIL L+ RD VVA GGP   ++ GR DG  S A  +E  LP  +D++  +   F    +    ++AL  +H++G  HC K+  R+++
Sbjct:   27 LSRGFYSKTCPNVEQIVRNAVQKKIKKTFVAVPATLRLFFHDCFVNGCDASVMIQSTPKNKAEKDHPDNISLAGDGFDVVIQAKKALDSNPSCRNKVSCADILTLATRDVVVAAGGPSYEVELGRFDGLVSTASSVEGNLPGPSDNVDKLNALFTKNKLTQEDMIALSAAHTLGFAHCGKVFKRIHK 213          
BLAST of FC920868 vs. ExPASy Swiss-Prot
Match: PER1_HORVU (Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 65/179 (36.31%), Postives = 90/179 (50.28%), Query Frame = 3
Query:  129 FYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAI-GIDAPGLVALLGSHSVGRTHCVKLVHRLY 662
            FY  +CP+A   IK  V            S LR  FHDC VQ CDAS+LL      + +  +  +  +R F  I++IK  +E  C   VSCADIL ++ RD VVALGGP   +  GRRD   +        LP  N S + +   F    G++   +VAL G+H++G+  C     R+Y
Sbjct:   27 FYDTSCPRALATIKSGVMAAVTSDPRMGASLLRLHFHDCFVQGCDASVLLSG----MEQNAIPNAGSLRGFGVIDSIKTQIEAICKQTVSCADILTVAARDSVVALGGPSWTVPLGRRDSIDANENEANTDLPGFNSSRAELEAAFLKKGGLNTVDMVALSGAHTIGQAQCSTFRARIY 201          
The following BLAST results are available for this feature:
BLAST of FC920868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER2_CUCSA1.671e-2533.90Peroxidase 2 (Fragment) OS=Cucumis sativus PE=2 SV... [more]
PER22_ARATH2.182e-2538.12Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=... [more]
PER1_SORBI4.862e-2538.64Cationic peroxidase SPC4 (Fragment) OS=Sorghum bic... [more]
PER60_ARATH6.350e-2536.41Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=... [more]
PER32_ARATH8.293e-2536.41Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=... [more]
PER1A_ARMRU8.293e-2534.22Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE... [more]
PER73_ARATH7.021e-2435.48Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=... [more]
PER70_ARATH7.021e-2438.20Peroxidase 70 OS=Arabidopsis thaliana GN=PER70 PE=... [more]
PER35_ARATH7.021e-2434.76Peroxidase 35 OS=Arabidopsis thaliana GN=PER35 PE=... [more]
PER1_HORVU7.762e-2336.31Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32014A10EF RVDevelop1 Citrus clementina cDNA clone C32014A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920868 ID=FC920868; Name=FC920868; organism=Citrus clementina; type=EST; length=727bp
AGAGAAGAGTAGAAGAGACAATGGGTACGAAAGCTGTCTTCTTGCTTTCA
GCTTTGCTTTCCTTCTCAGCTGTGTCTCTGAGGTCTGCTTTGGCAGAAAA
TGAAGAGGACCCAGGTCTTGTTATGAATTTTTACAAGGATACATGCCCTC
AGGCCGAGGACATTATCAAGGAACAAGTTAAGCTTCTGTACAAGCGCCAC
AAGAACACTGCATTTTCTTGGCTTAGAAACATTTTCCATGACTGTGCTGT
CCAGTCTTGTGATGCTTCACTGCTTCTGGACTCGACAAGAAAGACCTTGT
CTGAGAAGGAAATGGACAGGAGCTTTGGTATGAGGAACTTCAGGTACATT
GAGAACATCAAAGAAGCTGTTGAAAGAGAGTGCCCTGGTGTTGTTTCCTG
TGCTGATATTCTTGTCCTGTCCGGTAGAGATGGCGTTGTTGCGCTTGGAG
GCCCTTACATTCCTCTCAAGACAGGAAGAAGAGATGGTAGAAAAAGCAGA
GCAGAGATACTTGAGCAGTATCTCCCAGATCACAATGACAGCATGTCTGT
TGTTCTTGAGAGGTTTGCAGCCATTGGCATTGACGCCCCTGGACTTGTTG
CTCTGCTAGGATCTCACAGTGTTGGCAGAACTCATTGTGTGAAGCTGGTG
CACCGTCTGTACCAGAAGTTGACCCTGCACTGAACCCTGACACGTTCCGC
ATATGCTCCATAAGTGTCCTGATGCAA
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