FC920869

Overview
NameFC920869
Unique NameFC920869
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9858 contig Ccv1_Contig9858:15..471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.550e-29
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 1
Query:  151 TDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVN 435
            T GG++G+++   +F+ +L YRND RC   GFYTYDAFI AA++F  FG +G++  +K+E+AAF AQT  ETTGGWP AP G YAWGYC++ + N
Sbjct:   75 TGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQN 169          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.550e-29
Identity = 62/124 (50.00%), Postives = 81/124 (65.32%), Query Frame = 1
Query:   88 GGSAQNCGSGVVCGERDTGHGTDGGELGKIISREVFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            G + + CG G  C  +  G     G+LG +IS  +F+ +L +RND  C  +  FY+Y+AF+ AA +FP FG +G+ T RKREIAAF AQT  ETTGGWP AP G YAWGYC++R+   P  DYC
Sbjct:   47 GNTNEYCGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSP-GDYC 168          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.550e-29
Identity = 64/134 (47.76%), Postives = 82/134 (61.19%), Query Frame = 1
Query:   88 GGSAQNCGSGVVCGERDTGHG--------TDG---GELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            G +   CG G    +  +G G        T G   G++  IIS  +F+ +L +RND  C  + FYTY+AFI AA++F  FG +G+ T RKRE+AAFFAQT  ETTGGW  AP G YAWGYCY+R+   P S YC
Sbjct:   48 GNTQDYCGPGKCQSQCPSGPGPTPRPPTPTPGPSTGDISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPS-YC 180          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.024e-29
Identity = 71/160 (44.38%), Postives = 92/160 (57.50%), Query Frame = 1
Query:   55 LIFSLALSFVLGGSAQNCGS---------GVVCGE----------------RDTGHGTDGGELGKIISREVFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            L+FS+ L   L  SA+ CGS         G+ C +                +    G   G+LG +IS  +F+ +L +RND  C  +G FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT  ETTGGW  AP G YAWGYC++R+   P  DYC
Sbjct:    7 LLFSVLL---LSASAEQCGSQAGGALCASGLCCSKFGWCGNTNDYCGPGNCQSQCPGGSPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSP-GDYC 162          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.005e-28
Identity = 63/135 (46.67%), Postives = 82/135 (60.74%), Query Frame = 1
Query:   88 GGSAQNCGSGVVCGERDTGHG------------TDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            G ++  CG G  C  +  G G            + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   RKRE+AAF AQT  ETTGGW  AP G +AWGYC+ +Q     S+YC
Sbjct:   44 GSTSDYCGDG--CQSQCAGCGGGGTPVTPTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCF-KQERGATSNYC 175          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.312e-28
Identity = 61/112 (54.46%), Postives = 72/112 (64.29%), Query Frame = 1
Query:   88 GGSAQNCGSGVVCGERDTGHGTDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYI 423
            GG     G G   G    G G   G L  II   +F+D+L YRND +CPA GFYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT  ET G WP A G +Y WGYC++
Sbjct:   62 GGGGGGGGGG---GGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM 170          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.312e-28
Identity = 61/130 (46.92%), Postives = 79/130 (60.77%), Query Frame = 1
Query:   88 GGSAQNCGSGVV------CGERDTGHGTDGGE-LGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            G ++  CG+G        CG   T   + GG  +  IIS  +F+ +L +RND  C A+GFYTYDAF+ AA A+P F  +G+    KRE+AAF AQT  ETTGGWP AP G Y+WGYC+  + N  A  YC
Sbjct:   43 GSTSDYCGAGCQSQCSGGCGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYC 172          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.714e-28
Identity = 57/103 (55.34%), Postives = 72/103 (69.90%), Query Frame = 1
Query:  148 GTDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            GT  G +  I+SR  F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   +KRE+AAF AQT  ETTGGW  AP G +AWGYC+ +Q    +SDYC
Sbjct:   19 GTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCF-KQERGASSDYC 120          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 124.02 bits (310), Expect = 2.923e-28
Identity = 63/132 (47.73%), Postives = 80/132 (60.61%), Query Frame = 1
Query:   91 GSAQNCGSGVVCGERDTGHG----------TDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            GS   CG G  C  + +G G          + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AF  FG +G    RKRE+AAF AQT  ETTGGW  AP G +AWGYC+ +Q     S+YC
Sbjct:   44 GSTPYCGDG--CQSQCSGCGGGSTPVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCF-KQERGATSNYC 172          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.986e-28
Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 1
Query:  148 GTDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            GT  G +  IIS   F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   RKR++AAF AQT  ETTGGW  AP G +AWGYC+ +Q    A+DYC
Sbjct:   19 GTAHGSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCF-KQERGAAADYC 120          
The following BLAST results are available for this feature:
BLAST of FC920869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CHIX_PEA1.550e-2954.74Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIC_SOLLC1.550e-2950.00Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI3_TOBAC1.550e-2947.76Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_SOLTU2.024e-2944.38Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHIA_SECCE1.005e-2846.67Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHIB_POPTR1.312e-2854.46Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI3_ORYSJ1.312e-2846.92Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_HORVU1.714e-2855.3426 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_HORVU2.923e-2847.7326 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIC_SECCE4.986e-2855.34Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]

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Properties
Property NameValue
Genbank descriptionC32014B01EF RVDevelop1 Citrus clementina cDNA clone C32014B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920869 ID=FC920869; Name=FC920869; organism=Citrus clementina; type=EST; length=457bp
AAAGGATAATTGTCTCATAACTCAAACTTTCAAATGAGGCTCATTGGGTC
CTTACTAATTTTCTCTCTAGCTTTATCTTTTGTACTAGGAGGTTCAGCAC
AGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGG
ACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGGTGTTTGAAGA
CTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACA
CTTACGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAAC
TCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCA
AACTGGCGATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGAGAAT
ATGCTTGGGGATATTGCTATATTAGGCAAGTTAACCGCCCTGCGTCCGAC
TACTGTT
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