FC920869

Overview
NameFC920869
Unique NameFC920869
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9858 contig Ccv1_Contig9858:15..471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.200e-27
Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = 1
Query:  166 LGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            +  +IS+ +FE +L +RND  C A+GFYTY+AFI A K F AFG +G+   R +EIAAF AQT  ETTGGW  AP G Y+WGYCY R+   P  DYC
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSP-GDYC 100          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 7.200e-27
Identity = 60/123 (48.78%), Postives = 73/123 (59.35%), Query Frame = 1
Query:   94 SAQNCGSGVVCGERDTGHGTDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPAS-DYC 456
            SA  CG G          G+ G  +  I+SR +F+ +L +RND  CPA  FYTYDAF+ AA AFP F  +G +    KRE+AAF AQT  ETTGGW  AP G YAWGYC+  +    A  DYC
Sbjct:   61 SAAGCGGG----GPTPPSGSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYC 179          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.316e-25
Identity = 53/102 (51.96%), Postives = 74/102 (72.55%), Query Frame = 1
Query:  148 GTDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDY 453
            G+   ++G I++ ++F ++L  RND RCPA+GFYTYDAFI AA +FP FG +G++T RK+EIAAFF QT  ETTGG   A  G +A GYC++R+ N+  S +
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVREGNQMGSGF 113          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 8.801e-25
Identity = 51/97 (52.58%), Postives = 69/97 (71.13%), Query Frame = 1
Query:  148 GTDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNR 438
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T RK+EIAAFF QT  ET GG      G +  GYC++RQ+++
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQ 113          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.149e-24
Identity = 50/105 (47.62%), Postives = 65/105 (61.90%), Query Frame = 1
Query:  142 GHGTDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            G+      +  I+S +++  L  +++D  CPARGFYTY +F+ AA  FP F  +G    RKRE+AAF AQ   ETTGGW  AP G YAWG CY  ++N P S YC
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEIN-PQSSYC 144          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.961e-24
Identity = 50/97 (51.55%), Postives = 68/97 (70.10%), Query Frame = 1
Query:  148 GTDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNR 438
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T RK+EIAAFF QT  ET GG      G +  GYC+++Q+ +
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQ 113          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.345e-24
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1
Query:  148 GTDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDY 453
            GT    +G I++ ++F+ +L  RND RC A  FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT  ETTGG   +P G YA GYC++R+ N+  + Y
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQMGNGY 120          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.368e-24
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 1
Query:  166 LGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQV 432
            +G II+R +FE +L +R D  C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT  ETTGGW  AP G +AWGYC + ++
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEI 114          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.698e-23
Identity = 49/88 (55.68%), Postives = 64/88 (72.73%), Query Frame = 1
Query:  166 LGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQ 429
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FP FG SG++T R++EIAAFF QT  ETTGG   A    +  GYC++RQ
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ 112          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.076e-22
Identity = 48/88 (54.55%), Postives = 64/88 (72.73%), Query Frame = 1
Query:  166 LGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQ 429
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FP FG +G++T R++EIAAFF QT  ETTGG   A    +  GYC++RQ
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ 112          
The following BLAST results are available for this feature:
BLAST of FC920869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CHID_SOLLC7.200e-2755.67Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI12_ORYSJ7.200e-2748.78Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC2.316e-2551.96Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SOLCI8.801e-2552.58Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI10_ORYSJ1.149e-2447.62Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLLC1.961e-2451.55Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIT_PETHY3.345e-2451.96Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI11_ORYSJ4.368e-2455.06Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIP_TOBAC3.698e-2355.68Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIQ_TOBAC1.076e-2254.55Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionC32014B01EF RVDevelop1 Citrus clementina cDNA clone C32014B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920869 ID=FC920869; Name=FC920869; organism=Citrus clementina; type=EST; length=457bp
AAAGGATAATTGTCTCATAACTCAAACTTTCAAATGAGGCTCATTGGGTC
CTTACTAATTTTCTCTCTAGCTTTATCTTTTGTACTAGGAGGTTCAGCAC
AGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGG
ACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGGTGTTTGAAGA
CTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACA
CTTACGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAAC
TCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCA
AACTGGCGATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGAGAAT
ATGCTTGGGGATATTGCTATATTAGGCAAGTTAACCGCCCTGCGTCCGAC
TACTGTT
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