FC920869

Overview
NameFC920869
Unique NameFC920869
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9858 contig Ccv1_Contig9858:15..471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.397e-22
Identity = 51/115 (44.35%), Postives = 72/115 (62.61%), Query Frame = 1
Query:  106 CGSGVVCGERDTGHGTDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPAS 447
            C +  +     +G    G  +G +I++ VF  +LP R++ +CPARGFYTYDAFI AA +FPAFG SG    + +RE+AAFF QT  ETTGG       ++ WGYC+  ++N+  S
Sbjct:   14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGG-TRGSSDQFQWGYCFKEEINKATS 125          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.130e-22
Identity = 57/155 (36.77%), Postives = 81/155 (52.26%), Query Frame = 1
Query:   49 SLLIFSLALSFVLGGSAQNCGSGVVCGERDTGHG---TDGGELGKIIS----------------REVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            +L + SL LS +LG S+     G   G     +    + GG  G  ++                  +FE +LP RN+  CP +GFYTYDA+  A + +P FG +G++  RKRE+AAFFAQT  ET+G         + WGYC + ++N P SDYC
Sbjct:    5 ALTVLSLLLSLLLGVSSDTAQCGSQAGNATCPNDLCCSSGGYCGLTVAYCCAGCVSQCRNCFFTESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELN-PNSDYC 158          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.190e-21
Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 1
Query:  157 GGELG--KIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            GG  G   +++ + FE +LP+R+D  CPARGFY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT   T+       GG Y+WGYCY ++V    SD+C
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFC 185          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.190e-21
Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 1
Query:  157 GGELG--KIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            GG  G   +++ + FE +LP+R+D  CPARGFY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT   T+       GG Y+WGYCY ++V    SD+C
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFC 185          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.608e-18
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = 1
Query:  166 LGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWG 411
            +  +IS  +FE +L +R        GFYTYDAFI AAK+FPAF  +G+  +RKRE+AAF AQT  ETTGGWP AP G Y  G
Sbjct:    1 VSSVISSSLFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG 74          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 3.706e-15
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  139 TGHGTDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            +G+ T       +++  +F+ +  +R D  CP++GFY+Y +F+ AA++FPAFG  G+   RKRE+AAF A     T+G   D     +AWG C+I       +D+C
Sbjct:  121 SGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHINTTTVTENDFC 223          
BLAST of FC920869 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.352e-14
Identity = 44/123 (35.77%), Postives = 64/123 (52.03%), Query Frame = 1
Query:   88 GGSAQNCGSGVVCGERDTGHGTDGGELGKIISREVFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVNRPASDYC 456
            G  +  CG+G   G  D    T+   +  I++ E F  L+   +D  C A+GFYT DAF+ AA  +P+FG +G+    KREIAAFFA    ET               +CYI +++ P+ +YC
Sbjct:   43 GTGSDYCGTGCQAGPCDVP-ATNDVSVASIVTPEFFAALVAQADD-GCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYC 150          
The following BLAST results are available for this feature:
BLAST of FC920869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CHI8_ORYSJ2.397e-2244.35Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI8_POPTR3.130e-2236.77Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI7_ORYSJ1.190e-2149.02Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI1.190e-2149.02Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA1.608e-1854.88Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI3.706e-1535.85Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI6_ORYSJ5.352e-1435.77Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionC32014B01EF RVDevelop1 Citrus clementina cDNA clone C32014B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920869 ID=FC920869; Name=FC920869; organism=Citrus clementina; type=EST; length=457bp
AAAGGATAATTGTCTCATAACTCAAACTTTCAAATGAGGCTCATTGGGTC
CTTACTAATTTTCTCTCTAGCTTTATCTTTTGTACTAGGAGGTTCAGCAC
AGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGG
ACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGGTGTTTGAAGA
CTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACA
CTTACGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAAC
TCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCA
AACTGGCGATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGAGAAT
ATGCTTGGGGATATTGCTATATTAGGCAAGTTAACCGCCCTGCGTCCGAC
TACTGTT
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