FC920872

Overview
NameFC920872
Unique NameFC920872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 57/179 (31.84%), Postives = 88/179 (49.16%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNSHFVESPALAPPE 603
            FK+V++GD G GK+  + R    EF  + + TIGVE            ++   WDTAGQE++  +   YY     A++++D+T R T+ NV  W R+L      NI I++ GNK D+ + +  ++        K+ L + E SA    N EK F  +  ++      H V   ALA  E
Sbjct:   13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEI-----YHIVSKKALAAQE 186          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB7_PRUAR (Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 50/165 (30.30%), Postives = 84/165 (50.91%), Query Frame = 1
Query:   79 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 543
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV    +++N+  W  +          EN P V+ GNK+DV    +R V  K+       K N+ Y+E SAK  +N +  F  +A+
Sbjct:   10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPFVVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAK 174          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 51/161 (31.68%), Postives = 86/161 (53.42%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 549
            FKL+++GD G GKT  + R     F   Y  TIG++           KI+   WDTAGQE+F  +   YY      I+++D+T   +++N+  W + +       +  +L GNK D++  R+V+ +Q     R+  ++++E SAKS+ N ++ F  LAR +
Sbjct:    9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 61/186 (32.80%), Postives = 93/186 (50.00%), Query Frame = 1
Query:   55 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNSHFVESPALAPPE 603
            Q  DY  FK+V++GD G GK+  + R    EF  + + TIGVE            I+   WDTAGQE++  +   YY     A++++D+T R T+ NV  W R+L      NI I++ GNK D+ + +  A++   +   K+ L + E SA    N EK F  +  ++      H +   ALA  E
Sbjct:    7 QEYDY-LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEI-----YHIISKKALAAQE 186          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: VPS21_YEAST (Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae GN=VPS21 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18
Identity = 52/165 (31.52%), Postives = 88/165 (53.33%), Query Frame = 1
Query:   73 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDV-----KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 549
            S KLV++G+   GK++ V R ++ +F +  EPTIG          N   ++F  WDTAGQE+F  L   YY + Q A++++DVT   ++     W ++L  +  ++I I L GNK+D+     + +  + +      +K L ++E SAK+  N    FL +  K+
Sbjct:    7 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 171          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RYH1_SCHPO (GTP-binding protein ryh1 OS=Schizosaccharomyces pombe GN=ryh1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18
Identity = 52/166 (31.33%), Postives = 88/166 (53.01%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ--YYEISAKSNYNFEKPFLYLARKLAGDPN 564
            FKLV +G+   GKT+ + R +  +F+  Y+ TIG++      +     +R   WDTAGQE+F  L   Y      AII++D+T   ++ N   W  D+     +++ IVL GNK D+ +++   ++    + K L+  + E SAK+ +N +  F  +A+ L G  N
Sbjct:   12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGMEN 177          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18
Identity = 54/154 (35.06%), Postives = 80/154 (51.95%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 528
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +   F  K  L + E SA    N E  F
Sbjct:   12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAF 165          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB7B_MOUSE (Ras-related protein Rab-7b OS=Mus musculus GN=Rab7b PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18
Identity = 53/182 (29.12%), Postives = 102/182 (56.04%), Query Frame = 1
Query:   79 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR----KLAGDPNSHFVESPALAP 597
            KL+IVG  G GKT+ + +++   F ++Y+ T+G  +       +   ++   WDT GQE+F  +   +Y      I+ FDVT   +++ +  W  D L ++    ++ P+V+ GNK+D+++R+V  + V  + ++K++ Y+E+SAK++ N  + F  LA     +  G   +H ++S  L+P
Sbjct:   10 KLIIVGALGVGKTSLLHQYVHKTFFEEYQTTLGASILSKIIILDDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIIPMEQSYPMVVLGNKIDLEDRKVSQEVVHGWCKEKDMPYFEVSAKNDINVVQAFEVLASRALLRYQGTAENHLIDSIKLSP 191          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB6_DICDI (Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18
Identity = 55/168 (32.74%), Postives = 90/168 (53.57%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG-DPNS 567
            +KLV +GD   GKT+ + R +   F+  Y+ TIG++      +     +R   WDTAGQE+F  L   Y      AI+++D+T ++++ N   W  D+      N+ I+L GNK D+ + RQV  ++     K+ ++ + E SAK+ +N +  F  +A  L G D NS
Sbjct:    7 YKLVFLGDQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNERGNNVVIMLVGNKTDLADKRQVSIEEGEAKAKEYDIMFTETSAKAGFNIKALFRKVASALPGIDSNS 174          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18
Identity = 52/184 (28.26%), Postives = 91/184 (49.46%), Query Frame = 1
Query:   49 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNSHFVESPAL 591
            S Q  DY  FKL+I+G+   GKT+F+ R+    F   +  T+G++      F N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ +V + +       +   +++E SAK N N ++ F  L   +    +      PA+
Sbjct:   23 SDQNFDY-MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAI 205          
The following BLAST results are available for this feature:
BLAST of FC920872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11C_LOTJA2.411e-1831.84Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RAB7_PRUAR2.411e-1830.30Ras-related protein Rab7 OS=Prunus armeniaca PE=2 ... [more]
RAB13_HUMAN2.411e-1831.68Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAA2C_ARATH2.411e-1832.80Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
VPS21_YEAST3.149e-1831.52Vacuolar protein sorting-associated protein 21 OS=... [more]
RYH1_SCHPO3.149e-1831.33GTP-binding protein ryh1 OS=Schizosaccharomyces po... [more]
RB11A_BOVIN3.149e-1835.06Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RAB7B_MOUSE3.149e-1829.12Ras-related protein Rab-7b OS=Mus musculus GN=Rab7... [more]
RAB6_DICDI3.149e-1832.74Ras-related protein Rab-6 OS=Dictyostelium discoid... [more]
RAB3C_RAT3.149e-1828.26Ras-related protein Rab-3C OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC32014B04EF RVDevelop1 Citrus clementina cDNA clone C32014B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920872 ID=FC920872; Name=FC920872; organism=Citrus clementina; type=EST; length=693bp
CGAACTTCGTATTCTTTCGCACACAGTACTCAACTCTTGGCTCTGCCAAG
TCAGCAAACTGTTGATTACCCGAGCTTCAAACTCGTCATAGTCGGCGACG
GTGGCACTGGGAAGACTACCTTTGTGAAGAGGCATCTGACTGGGGAGTTT
GAGAAGAAGTATGAACCAACTATTGGTGTGGAGGTTCATCCGTTGGATTT
CTTTACAAATTGTGGCAAAATCCGTTTCTACTGCTGGGACACTGCTGGCC
AGGAAAAGTTTGGTGGTCTTAGAGATGGTTATTACATCCATGGGCAATGT
GCCATCATTATGTTTGATGTTACTGCCCGATTGACATACAAGAATGTCCC
CACTTGGCACCGTGATCTTTGCCGGGTGTGTGAAAATATACCGATTGTTC
TCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGCAAAGCAG
GTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTTCTGCCAA
GAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGGAAGCTTG
CTGGGGACCCAAATTCGCACTTCGTGGAATCTCCTGCTCTCGCTCCTCCA
GAAGTACAGATTGACTTAGCTGCACAGCACAACATGAAGCCGAGCTTGCC
GCAGCAGCTAGCCAGCCGCTTCCTGATGACGATGATGATGCAT
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