FC920872
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18 Identity = 57/179 (31.84%), Postives = 88/179 (49.16%), Query Frame = 1 Query: 76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNSHFVESPALAPPE 603 FK+V++GD G GK+ + R EF + + TIGVE ++ WDTAGQE++ + YY A++++D+T R T+ NV W R+L NI I++ GNK D+ + + ++ K+ L + E SA N EK F + ++ H V ALA E Sbjct: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEI-----YHIVSKKALAAQE 186
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB7_PRUAR (Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18 Identity = 50/165 (30.30%), Postives = 84/165 (50.91%), Query Frame = 1 Query: 79 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 543 K++I+GD G GKT+ + +++ +F +Y+ TIG + + WDTAGQE+F L +Y C ++++DV +++N+ W + EN P V+ GNK+DV +R V K+ K N+ Y+E SAK +N + F +A+ Sbjct: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPFVVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAK 174
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18 Identity = 51/161 (31.68%), Postives = 86/161 (53.42%), Query Frame = 1 Query: 76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 549 FKL+++GD G GKT + R F Y TIG++ KI+ WDTAGQE+F + YY I+++D+T +++N+ W + + + +L GNK D++ R+V+ +Q R+ ++++E SAKS+ N ++ F LAR + Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4) HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18 Identity = 61/186 (32.80%), Postives = 93/186 (50.00%), Query Frame = 1 Query: 55 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNSHFVESPALAPPE 603 Q DY FK+V++GD G GK+ + R EF + + TIGVE I+ WDTAGQE++ + YY A++++D+T R T+ NV W R+L NI I++ GNK D+ + + A++ + K+ L + E SA N EK F + ++ H + ALA E Sbjct: 7 QEYDY-LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEI-----YHIISKKALAAQE 186
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: VPS21_YEAST (Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae GN=VPS21 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18 Identity = 52/165 (31.52%), Postives = 88/165 (53.33%), Query Frame = 1 Query: 73 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDV-----KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 549 S KLV++G+ GK++ V R ++ +F + EPTIG N ++F WDTAGQE+F L YY + Q A++++DVT ++ W ++L + ++I I L GNK+D+ + + + + +K L ++E SAK+ N FL + K+ Sbjct: 7 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 171
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RYH1_SCHPO (GTP-binding protein ryh1 OS=Schizosaccharomyces pombe GN=ryh1 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18 Identity = 52/166 (31.33%), Postives = 88/166 (53.01%), Query Frame = 1 Query: 76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ--YYEISAKSNYNFEKPFLYLARKLAGDPN 564 FKLV +G+ GKT+ + R + +F+ Y+ TIG++ + +R WDTAGQE+F L Y AII++D+T ++ N W D+ +++ IVL GNK D+ +++ ++ + K L+ + E SAK+ +N + F +A+ L G N Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGMEN 177
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3) HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18 Identity = 54/154 (35.06%), Postives = 80/154 (51.95%), Query Frame = 1 Query: 76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 528 FK+V++GD G GK+ + R EF + + TIGVE + I+ WDTAGQE++ + YY A++++D+ LTY+NV W ++L NI I+L GNK D+++ R V + F K L + E SA N E F Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAF 165
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB7B_MOUSE (Ras-related protein Rab-7b OS=Mus musculus GN=Rab7b PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18 Identity = 53/182 (29.12%), Postives = 102/182 (56.04%), Query Frame = 1 Query: 79 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR----KLAGDPNSHFVESPALAP 597 KL+IVG G GKT+ + +++ F ++Y+ T+G + + ++ WDT GQE+F + +Y I+ FDVT +++ + W D L ++ ++ P+V+ GNK+D+++R+V + V + ++K++ Y+E+SAK++ N + F LA + G +H ++S L+P Sbjct: 10 KLIIVGALGVGKTSLLHQYVHKTFFEEYQTTLGASILSKIIILDDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIIPMEQSYPMVVLGNKIDLEDRKVSQEVVHGWCKEKDMPYFEVSAKNDINVVQAFEVLASRALLRYQGTAENHLIDSIKLSP 191
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB6_DICDI (Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18 Identity = 55/168 (32.74%), Postives = 90/168 (53.57%), Query Frame = 1 Query: 76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG-DPNS 567 +KLV +GD GKT+ + R + F+ Y+ TIG++ + +R WDTAGQE+F L Y AI+++D+T ++++ N W D+ N+ I+L GNK D+ + RQV ++ K+ ++ + E SAK+ +N + F +A L G D NS Sbjct: 7 YKLVFLGDQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNERGNNVVIMLVGNKTDLADKRQVSIEEGEAKAKEYDIMFTETSAKAGFNIKALFRKVASALPGIDSNS 174
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18 Identity = 52/184 (28.26%), Postives = 91/184 (49.46%), Query Frame = 1 Query: 49 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNSHFVESPAL 591 S Q DY FKL+I+G+ GKT+F+ R+ F + T+G++ F N +I+ WDTAGQE++ + YY I+M+D+T ++ V W + +N ++L GNK D+++ +V + + + +++E SAK N N ++ F L + + PA+ Sbjct: 23 SDQNFDY-MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAI 205 The following BLAST results are available for this feature:
BLAST of FC920872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920872 ID=FC920872; Name=FC920872; organism=Citrus clementina; type=EST; length=693bpback to top |