FC920872
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18 Identity = 52/184 (28.26%), Postives = 91/184 (49.46%), Query Frame = 1 Query: 49 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNSHFVESPAL 591 S Q DY FKL+I+G+ GKT+F+ R+ F + T+G++ F N +I+ WDTAGQE++ + YY I+M+D+T ++ V W + +N ++L GNK D+++ +V + + + +++E SAK N N ++ F L + + PA+ Sbjct: 23 SDQNFDY-MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAI 205
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18 Identity = 55/156 (35.26%), Postives = 84/156 (53.85%), Query Frame = 1 Query: 76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQV----TFHRKKNLQYYEISAKSNYNFEKPF 528 FK+V++GD G GK+ + R EF + + TIGVE + I+ WDTAGQE++ + YY A++++DVT T++NV TW ++L + NI ++L GNK D+ R + A Q +F K++L + E SA N E F Sbjct: 14 FKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDL--RHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAF 167
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18 Identity = 53/166 (31.93%), Postives = 85/166 (51.20%), Query Frame = 1 Query: 73 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV--LCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 561 + K++I+G+ G GK++ + R F+ + TIGV+ + + + WDTAGQE+F L YY Q I+++DVT R T+ + W +L C +V L GNK+D NR+V + + F RK ++ + E SAK+ + F L K+ P Sbjct: 8 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLENWLNELETYCTRNDLVKMLVGNKIDKDNREVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTP 173
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB7_GOSHI (Ras-related protein Rab7 OS=Gossypium hirsutum GN=RAB7 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18 Identity = 52/165 (31.52%), Postives = 83/165 (50.30%), Query Frame = 1 Query: 79 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 543 K++I+GD G GKT+ + +++ +F +Y+ TIG + + + WDTAGQE+F L +Y C +++ DV ++ N+ W + EN P V+ GNKVDV +R V K+ K N+ Y+E SAK +N + F +AR Sbjct: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFDDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIAR 174
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB7B_DICDI (Ras-related protein Rab-7B OS=Dictyostelium discoideum GN=rab7B PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18 Identity = 61/198 (30.81%), Postives = 94/198 (47.47%), Query Frame = 1 Query: 79 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKNRQVKAKQVTFHRKK----NLQYYEISAKSNYNFEKPFLYLARKLAGDPNSHFVESPALAPPEVQIDLAAQHNMKPS 645 K+VI+G+ GKT+ ++R++ F +PTIGV+ + + WDT+GQE+F L YY I++FDVT T ++ W D E P ++ GNK+D NR V K K NL Y++ SAK N N E+ F +++ + P S+ + PPE I L + + + S Sbjct: 9 KVVIIGEKSVGKTSILRRYVDKRFVT-LKPTIGVDF----VMVSENMVTLQLWDTSGQERFRSLEISYYRGADYCILVFDVTNEKTLYDLKLWRDDFIEKTEIRDPILFPFIILGNKIDDPNRVVTEKAAIQWCKDNIGGNLTYFDTSAKDNINIEQVFKHISNQCENQPQSNEI------PPEQLISLTEKKSNQSS 195
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB6A_CAEEL (Ras-related protein Rab-6.1 OS=Caenorhabditis elegans GN=rab-6.1 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18 Identity = 60/183 (32.79%), Postives = 91/183 (49.73%), Query Frame = 1 Query: 76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC--RVCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNSHFVESPALA---PPE 603 FKLV +G+ GKT+ + R + F+ Y+ TIG++ + IR WDTAGQE+F L Y A++++D+T ++ W D+ R C+ I IVL GNK D+ + RQV + R N+ + E SAK+ YN ++ F +A L G E P + PP+ Sbjct: 12 FKLVFLGEQSVGKTSIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVI-IVLVGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLFRKIATALPGIVQEETPEQPNIVIMNPPK 193
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18 Identity = 53/161 (32.92%), Postives = 89/161 (55.28%), Query Frame = 1 Query: 76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 549 FK +I+GD G GK+ + + F+ ++ TIGVE + +I+ WDTAGQE F + YY A++++D+T R T+ ++ TW D + N+ I+L GNK D+++R+ K+ F R+ L + E SAK+ N E+ F+ A+++ Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18 Identity = 53/161 (32.92%), Postives = 89/161 (55.28%), Query Frame = 1 Query: 76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 549 FK +I+GD G GK+ + + F+ ++ TIGVE + +I+ WDTAGQE F + YY A++++D+T R T+ ++ TW D + N+ I+L GNK D+++R+ K+ F R+ L + E SAK+ N E+ F+ A+++ Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18 Identity = 53/161 (32.92%), Postives = 89/161 (55.28%), Query Frame = 1 Query: 76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 549 FK +I+GD G GK+ + + F+ ++ TIGVE + +I+ WDTAGQE F + YY A++++D+T R T+ ++ TW D + N+ I+L GNK D+++R+ K+ F R+ L + E SAK+ N E+ F+ A+++ Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18 Identity = 53/161 (32.92%), Postives = 89/161 (55.28%), Query Frame = 1 Query: 76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 549 FK +I+GD G GK+ + + F+ ++ TIGVE + +I+ WDTAGQE F + YY A++++D+T R T+ ++ TW D + N+ I+L GNK D+++R+ K+ F R+ L + E SAK+ N E+ F+ A+++ Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167 The following BLAST results are available for this feature:
BLAST of FC920872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920872 ID=FC920872; Name=FC920872; organism=Citrus clementina; type=EST; length=693bpback to top |