FC920872

Overview
NameFC920872
Unique NameFC920872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RASD_DICDI (Ras-like protein rasD OS=Dictyostelium discoideum GN=rasD PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 55/172 (31.98%), Postives = 89/172 (51.74%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR----KLAGDPNS 567
            +KLVIVG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   GQ  + ++ +T+R +Y  + ++   + RV   + +P++L GNK D+ + RQV   +     +  N  + E SAKS  N E+ F  L R    +L GD +S
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIE-DSYRKQVSIDDETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSYDEIASFREQILRVKDKDRVPLILVGNKADLDHERQVSVNEGQELAKGFNCPFMESSAKSRINVEEAFYSLVREIRKELKGDQSS 174          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RASC_DICDI (Ras-like protein rasC OS=Dictyostelium discoideum GN=rasC PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 54/172 (31.40%), Postives = 84/172 (48.84%), Query Frame = 1
Query:   79 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV---TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 549
            KLVIVGDGG GK+    +    +F  +Y+PTI            EV+ LD             DTAGQE++  +RD Y   G+  +I++ + +R +++ V T+   + RV      PIV+ GNK D+ ++  K   +      +     + E SAKS  N E+ F  L R++
Sbjct:    6 KLVIVGDGGVGKSALTIQLTQNQFIAEYDPTIENSYRKQVNIDEEVYMLDIL-----------DTAGQEEYSAMRDQYIRSGRGFLIVYSIISRASFEAVTTFREQILRVKDLSTYPIVIIGNKADLPDKDRKVPPMEGKELAKSFGAPFLETSAKSRVNVEEAFFTLVREI 166          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RACC_DICDI (Rho-related protein racC OS=Dictyostelium discoideum GN=racC PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 49/166 (29.52%), Postives = 84/166 (50.60%), Query Frame = 1
Query:   79 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVT-------FHRKKNLQYYEISAKSNYNFEKPF 528
            KLV++GDG  GKT  +  +    F + Y PT+  + + ++       I    WDTAGQE++  LR   Y +    +I F +T  ++++NV T W+ ++   C  +P +L G K+D ++        +Q   K +T         R K ++Y E SAK++ N ++ F
Sbjct:    8 KLVVIGDGAVGKTCLLISYANNRFPEDYIPTV-FDNYVVNLTAGDRNIELGLWDTAGQEEYDKLRPLSYANANVFLICFSITNPVSFENVYTKWYPEVMHFCPEVPQILVGTKLDTRDDRGVLDKLQQTGHKPITTEQGNDLARRIKAIKYMECSAKTSQNLKQVF 172          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RECG_ENTHI (Rho-related protein racG OS=Entamoeba histolytica GN=RACG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 45/126 (35.71%), Postives = 68/126 (53.97%), Query Frame = 1
Query:   79 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 453
            KLVIVGDG  GKT  +  + T  F  +Y PT+  E +      +  KI    WDTAGQE +  LR   Y      ++ F V A  +Y+NV   W  ++ + C N+PI+L G K+D+++   + K++
Sbjct:    5 KLVIVGDGAVGKTCMLISYTTNAFPNEYIPTV-FENYNSSLVVDDVKINLGLWDTAGQEDYDRLRPLSYPSTDVFLVCFSVIAPASYENVEGKWKPEIDQHCPNVPIILVGTKIDIRDDPEQVKRL 129          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RB33B_PONAB (Ras-related protein Rab-33B OS=Pongo abelii GN=RAB33B PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 52/167 (31.14%), Postives = 87/167 (52.10%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKS---NYNFEKPFLYLARKL 549
            FK++++GD   GKT    R   G F  + E TIGV+        +  +I+   WDTAGQE+F   +   YY +    + ++D+T   ++ ++P+W  + C+   +  +IP +L GNK D+++  QV       F    ++  +E SAK+   N + E  F+ LA KL
Sbjct:   34 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEE-CKQHLLASDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 199          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RB33B_HUMAN (Ras-related protein Rab-33B OS=Homo sapiens GN=RAB33B PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 52/167 (31.14%), Postives = 87/167 (52.10%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKS---NYNFEKPFLYLARKL 549
            FK++++GD   GKT    R   G F  + E TIGV+        +  +I+   WDTAGQE+F   +   YY +    + ++D+T   ++ ++P+W  + C+   +  +IP +L GNK D+++  QV       F    ++  +E SAK+   N + E  F+ LA KL
Sbjct:   34 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEE-CKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 199          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAS_SCHPO (Ras-like protein 1 OS=Schizosaccharomyces pombe GN=ras1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 549
            +KLV+VGDGG GK+    + +   F  +Y+PTI             G +     DTAGQE++  +R+ Y   G+  ++++++T+R ++  + T+++ + RV   +  P+VL  NK D++  +V  +A+     +  +  Y E SAK   N E+ F  L R +
Sbjct:    9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGAL-LDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTI 169          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB12_RAT (Ras-related protein Rab-12 (Fragment) OS=Rattus norvegicus GN=Rab12 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 46/153 (30.07%), Postives = 84/153 (54.90%), Query Frame = 1
Query:   91 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYL 537
            +G  G GKT+ ++R     F +  + T+GV+           KIR   WDTAGQE+F  +   YY   +  I+++D+T + T+ ++P W + + +   E+  ++L GNK+D + +R++  +Q     ++   ++  E SAK N+N ++ FL L
Sbjct:    1 IGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLAGNKLDCETDREISRQQGEKFAQQITGMRLSEPSAKDNFNVDEIFLKL 153          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RB33B_MOUSE (Ras-related protein Rab-33B OS=Mus musculus GN=Rab33b PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 52/167 (31.14%), Postives = 86/167 (51.50%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKS---NYNFEKPFLYLARKL 549
            FK++++GD   GKT    R   G F  + E TIGV+        +  +I+   WDTAGQE+F   +   YY +    + ++D+T   ++ ++P W  + C+   +  +IP +L GNK D+++  QV       F    ++  +E SAK+   N + E  F+ LA KL
Sbjct:   34 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEE-CKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 199          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RASS_DICDI (Ras-like protein rasS OS=Dictyostelium discoideum GN=rasS PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 54/172 (31.40%), Postives = 88/172 (51.16%), Query Frame = 1
Query:   73 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR--KLAGDPNSH 570
            +FKLV+VG GG GK+    + +  +F  +Y+PT+  + +      +  +     +DTAGQE F  +RD Y   G+  + ++ +T   ++K +   H  L +V   +++P VL GNK D+   R+V  A+     +K N ++ E SAK   N  + F  L R  K A   N H
Sbjct:    3 NFKLVLVGPGGVGKSCLTIQFIAQKFVDEYDPTLE-DSYRKQTTVDGEECLLDIYDTAGQEDFSAVRDQYMRTGEGFLCVYSITYLQSFKEIHRLHNHLLKVKDLDSVPFVLVGNKCDLNEYREVSTAEGEELAKKLNCKFLETSAKERINVSESFYELVREVKKARQSNQH 173          
The following BLAST results are available for this feature:
BLAST of FC920872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASD_DICDI7.259e-1531.98Ras-like protein rasD OS=Dictyostelium discoideum ... [more]
RASC_DICDI7.259e-1531.40Ras-like protein rasC OS=Dictyostelium discoideum ... [more]
RACC_DICDI7.259e-1529.52Rho-related protein racC OS=Dictyostelium discoide... [more]
RECG_ENTHI9.481e-1535.71Rho-related protein racG OS=Entamoeba histolytica ... [more]
RB33B_PONAB9.481e-1531.14Ras-related protein Rab-33B OS=Pongo abelii GN=RAB... [more]
RB33B_HUMAN9.481e-1531.14Ras-related protein Rab-33B OS=Homo sapiens GN=RAB... [more]
RAS_SCHPO9.481e-1529.63Ras-like protein 1 OS=Schizosaccharomyces pombe GN... [more]
RAB12_RAT9.481e-1530.07Ras-related protein Rab-12 (Fragment) OS=Rattus no... [more]
RB33B_MOUSE1.238e-1431.14Ras-related protein Rab-33B OS=Mus musculus GN=Rab... [more]
RASS_DICDI1.238e-1431.40Ras-like protein rasS OS=Dictyostelium discoideum ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32014B04EF RVDevelop1 Citrus clementina cDNA clone C32014B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920872 ID=FC920872; Name=FC920872; organism=Citrus clementina; type=EST; length=693bp
CGAACTTCGTATTCTTTCGCACACAGTACTCAACTCTTGGCTCTGCCAAG
TCAGCAAACTGTTGATTACCCGAGCTTCAAACTCGTCATAGTCGGCGACG
GTGGCACTGGGAAGACTACCTTTGTGAAGAGGCATCTGACTGGGGAGTTT
GAGAAGAAGTATGAACCAACTATTGGTGTGGAGGTTCATCCGTTGGATTT
CTTTACAAATTGTGGCAAAATCCGTTTCTACTGCTGGGACACTGCTGGCC
AGGAAAAGTTTGGTGGTCTTAGAGATGGTTATTACATCCATGGGCAATGT
GCCATCATTATGTTTGATGTTACTGCCCGATTGACATACAAGAATGTCCC
CACTTGGCACCGTGATCTTTGCCGGGTGTGTGAAAATATACCGATTGTTC
TCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGCAAAGCAG
GTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTTCTGCCAA
GAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGGAAGCTTG
CTGGGGACCCAAATTCGCACTTCGTGGAATCTCCTGCTCTCGCTCCTCCA
GAAGTACAGATTGACTTAGCTGCACAGCACAACATGAAGCCGAGCTTGCC
GCAGCAGCTAGCCAGCCGCTTCCTGATGACGATGATGATGCAT
back to top