FC920872

Overview
NameFC920872
Unique NameFC920872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RHOG_MOUSE (Rho-related GTP-binding protein RhoG OS=Mus musculus GN=Rhog PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   73 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 426
            S K V+VGDG  GKT  +  + T  F K+Y PT+  + +      +   +    WDTAGQE++  LR   Y      +I F + +  +Y+NV   WH ++C  C ++PI+L G K D++
Sbjct:    3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR 120          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RHOG_HUMAN (Rho-related GTP-binding protein RhoG OS=Homo sapiens GN=RHOG PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   73 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 426
            S K V+VGDG  GKT  +  + T  F K+Y PT+  + +      +   +    WDTAGQE++  LR   Y      +I F + +  +Y+NV   WH ++C  C ++PI+L G K D++
Sbjct:    3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR 120          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RHOG_CRICR (Rho-related GTP-binding protein RhoG OS=Cricetus cricetus GN=RHOG PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   73 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 426
            S K V+VGDG  GKT  +  + T  F K+Y PT+  + +      +   +    WDTAGQE++  LR   Y      +I F + +  +Y+NV   WH ++C  C ++PI+L G K D++
Sbjct:    3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR 120          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RHO5_SCHPO (GTP-binding protein rho5 OS=Schizosaccharomyces pombe GN=rho5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 58/171 (33.92%), Postives = 78/171 (45.61%), Query Frame = 1
Query:   79 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 543
            KLVIVGDG  GKT  +     G F + Y PT+  E +  D   +   I    WDTAGQE +  LR   Y      +I F V A  +  NV   W  ++   C N+PI+L G KVD++N         +   K +TF   + +       +Y E SAK N    + F   AR
Sbjct:    8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTV-FENYVADVEVDGRHIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRNDPKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETAAR 177          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RB39A_MOUSE (Ras-related protein Rab-39A OS=Mus musculus GN=Rab39 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 52/174 (29.89%), Postives = 85/174 (48.85%), Query Frame = 1
Query:   55 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV--LCGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 549
            +T+    F+L+++GD   GK+  + R   G F   +    +PT+GV+          GK I+   WDTAGQE+F  +   YY +     ++FD+T R ++++V  W  +     +   IV  L G+K D+   RQV  ++         ++Y E SAK   N E+ F  L R +
Sbjct:    2 ETIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLHSPACDPTVGVDFFSRLLEIEPGKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMHVQPFQIVFLLVGHKCDLASQRQVSREEAERLSTDCGMKYIETSAKDATNVEESFTILTRDI 175          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RB22A_MOUSE (Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 48/160 (30.00%), Postives = 81/160 (50.62%), Query Frame = 1
Query:   79 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 549
            K+ ++GD G GK++ V R +   F+    PTIG               +F  WDTAGQE+F  L   YY     AII++D+T   T+  +  W R+L +    +I + + GNK D+ + R+V  +    +    +  + E SAK+  N  + F+ ++R++
Sbjct:    7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RB22A_HUMAN (Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = 1
Query:   79 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVD-VKNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 549
            K+ ++GD G GK++ V R +   F+    PTIG               +F  WDTAGQE+F  L   YY     AII++D+T   T+  +  W ++L +    NI + + GNK D +  R+V  +    +    +  + E SAK+  N  + F+ ++R++
Sbjct:    7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAS1_YEAST (Ras-like protein 1 OS=Saccharomyces cerevisiae GN=RAS1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 49/165 (29.70%), Postives = 91/165 (55.15%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 558
            +K+V+VG GG GK+    + +   F  +Y+PTI           +   I     DTAGQE++  +R+ Y   G+  ++++ VT+R ++  + ++++ + RV ++  IP+V+ GNK+D++N RQV  +  +   ++ N  + E SAK   N ++ F  L R +  D
Sbjct:   11 YKIVVVGGGGVGKSALTIQFIQSYFVDEYDPTIEDSYRKQVVIDDKVSI-LDILDTAGQEEYSAMREQYMRTGEGFLLVYSVTSRNSFDELLSYYQQIQRVKDSDYIPVVVVGNKLDLENERQVSYEDGLRLAKQLNAPFLETSAKQAINVDEAFYSLIRLVRDD 174          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RALB_MOUSE (Ras-related protein Ral-B OS=Mus musculus GN=Ralb PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 1
Query:   79 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDV-KNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 549
            K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE +  +RD Y+  G+  +++F +T   ++     +   + RV    + IP+++ GNK D+ + RQV   +     ++  +QY E SAK+  N +K F  L R++
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKSEEDKIPLLVVGNKSDLEERRQVPVDEARGKAEEWGVQYVETSAKTRANVDKVFFDLMREI 176          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 53/165 (32.12%), Postives = 85/165 (51.52%), Query Frame = 1
Query:   79 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---CGKI--RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 549
            K+ ++GD G GK++ V R +   F+    PTIG       F T    CG    +F  WDTAGQE+F  L   YY     A+I++D+T + ++  +  W ++L     ENI + + GNK D+ + R+V  K    + +       E SAK+  N E+ F  ++R++
Sbjct:    7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS-----FMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 166          
The following BLAST results are available for this feature:
BLAST of FC920872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOG_MOUSE8.026e-1434.45Rho-related GTP-binding protein RhoG OS=Mus muscul... [more]
RHOG_HUMAN8.026e-1434.45Rho-related GTP-binding protein RhoG OS=Homo sapie... [more]
RHOG_CRICR8.026e-1434.45Rho-related GTP-binding protein RhoG OS=Cricetus c... [more]
RHO5_SCHPO8.026e-1433.92GTP-binding protein rho5 OS=Schizosaccharomyces po... [more]
RB39A_MOUSE8.026e-1429.89Ras-related protein Rab-39A OS=Mus musculus GN=Rab... [more]
RB22A_MOUSE8.026e-1430.00Ras-related protein Rab-22A OS=Mus musculus GN=Rab... [more]
RB22A_HUMAN8.026e-1430.00Ras-related protein Rab-22A OS=Homo sapiens GN=RAB... [more]
RAS1_YEAST8.026e-1429.70Ras-like protein 1 OS=Saccharomyces cerevisiae GN=... [more]
RALB_MOUSE8.026e-1429.01Ras-related protein Ral-B OS=Mus musculus GN=Ralb ... [more]
RAB31_HUMAN8.026e-1432.12Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]

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Properties
Property NameValue
Genbank descriptionC32014B04EF RVDevelop1 Citrus clementina cDNA clone C32014B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920872 ID=FC920872; Name=FC920872; organism=Citrus clementina; type=EST; length=693bp
CGAACTTCGTATTCTTTCGCACACAGTACTCAACTCTTGGCTCTGCCAAG
TCAGCAAACTGTTGATTACCCGAGCTTCAAACTCGTCATAGTCGGCGACG
GTGGCACTGGGAAGACTACCTTTGTGAAGAGGCATCTGACTGGGGAGTTT
GAGAAGAAGTATGAACCAACTATTGGTGTGGAGGTTCATCCGTTGGATTT
CTTTACAAATTGTGGCAAAATCCGTTTCTACTGCTGGGACACTGCTGGCC
AGGAAAAGTTTGGTGGTCTTAGAGATGGTTATTACATCCATGGGCAATGT
GCCATCATTATGTTTGATGTTACTGCCCGATTGACATACAAGAATGTCCC
CACTTGGCACCGTGATCTTTGCCGGGTGTGTGAAAATATACCGATTGTTC
TCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGCAAAGCAG
GTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTTCTGCCAA
GAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGGAAGCTTG
CTGGGGACCCAAATTCGCACTTCGTGGAATCTCCTGCTCTCGCTCCTCCA
GAAGTACAGATTGACTTAGCTGCACAGCACAACATGAAGCCGAGCTTGCC
GCAGCAGCTAGCCAGCCGCTTCCTGATGACGATGATGATGCAT
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