FC920872

Overview
NameFC920872
Unique NameFC920872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14105 contig Ccv1_Contig14105:67..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB9A_MOUSE (Ras-related protein Rab-9A OS=Mus musculus GN=Rab9a PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.594e-22
Identity = 56/178 (31.46%), Postives = 94/178 (52.81%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG--DPNSHFVES 582
            FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ GNK D+K RQV  ++     K N    Y+E SAK + N    F    R++    D + H +++
Sbjct:    8 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILATEDRSEHLIQT 185          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.784e-21
Identity = 58/177 (32.77%), Postives = 94/177 (53.11%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNSHFVESPALAP 597
            FK+V++G+ G GKT  V+R   G F      TIGV+        N  K++   WDTAGQE+F  +   YY      I+ +D+T   +++ +P W R++ +   N +  VL GNK+D+  R+  ++Q    F   +++ Y E SAK + N EK FL LA +L  +   + + +   +P
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSP 186          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.784e-21
Identity = 58/177 (32.77%), Postives = 94/177 (53.11%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNSHFVESPALAP 597
            FK+V++G+ G GKT  V+R   G F      TIGV+        N  K++   WDTAGQE+F  +   YY      I+ +D+T   +++ +P W R++ +   N +  VL GNK+D+  R+  ++Q    F   +++ Y E SAK + N EK FL LA +L  +   + + +   +P
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSP 186          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.784e-21
Identity = 58/177 (32.77%), Postives = 94/177 (53.11%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNSHFVESPALAP 597
            FK+V++G+ G GKT  V+R   G F      TIGV+        N  K++   WDTAGQE+F  +   YY      I+ +D+T   +++ +P W R++ +   N +  VL GNK+D+  R+  ++Q    F   +++ Y E SAK + N EK FL LA +L  +   + + +   +P
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSP 186          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB7A_DICDI (Ras-related protein Rab-7A OS=Dictyostelium discoideum GN=rab7A PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 52/163 (31.90%), Postives = 88/163 (53.99%), Query Frame = 1
Query:   79 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 543
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE+F  L   +Y    C ++ +DV    T++N+ +W  +       R  +N P V+ GNK+D++N++V   K        K N+ Y+E SAK   N E+ F  +AR
Sbjct:   10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKELMVDDRVVTMQIWDTAGQERFQSLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPFVVLGNKIDLENQRVVSQKRAASWCQSKGNIPYFETSAKEAINVEQAFQTIAR 172          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB19_XENLA (Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 63/191 (32.98%), Postives = 101/191 (52.88%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG---------DPNSHFV--ESPALAPPE 603
            FK++++GD   GKT  V R  +G F    + TIGV+        N  K++   WDTAGQE+F  +   YY     AII +D+T R ++++VP W  +  +    N+ ++L GNK D+ + RQ+  ++     +K+  L   E SAK ++N ++ FL +A++L            P + F+    P LAPPE
Sbjct:   16 FKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAGKYGAANLMLMLMGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKELIARNTFHYHNESPRNSFILDSKPVLAPPE 206          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RBH1C_ARATH (Ras-related protein RABH1C OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.043e-21
Identity = 60/164 (36.59%), Postives = 87/164 (53.05%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD-VKNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 555
            FKLV +GD   GKT+ + R +  +F+  Y+PTIG++      +     +R   WDTAGQE+F  L   Y      AI+++DV+ R T+ N   W  D+ R     N+ IVL GNK D V+ RQV   +     K+  + + E SAK N+N +  F  +A  L G
Sbjct:   10 FKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVLVGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPG 173          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.043e-21
Identity = 56/165 (33.94%), Postives = 94/165 (56.97%), Query Frame = 1
Query:   43 LPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 528
            +P ++  +Y  FK+VI+GD   GK+  + R    EF +K + TIGV+        +   I   CWDTAGQE+F  +  GYY     A+I++D+T+++++KNV  W  +L  + E +I I++ GNK D++ +R+V  K+   F     + + E SA ++ N  + F
Sbjct:    1 MPQEEEAEY-LFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSF 164          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB19_XENTR (Ras-related protein Rab-19 OS=Xenopus tropicalis GN=rab19 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.043e-21
Identity = 63/191 (32.98%), Postives = 103/191 (53.93%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKL---------AGDPNSHFV--ESPALAPPE 603
            FK++++GD   GKT  V R  +G F    + TIGV+    +   N  K++   WDTAGQE+F  +   YY     AII +D+T R ++++VP W  +  +    N+ ++L GNK D+ + RQ+  ++     +K+  L   E SAK ++N ++ FL +A++L         +  P + F+    P LAPPE
Sbjct:   16 FKIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVRNMNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAEKYGAANLMMMLIGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVFLLMAKELIARNTFHYHSESPRNSFMLDSKPVLAPPE 206          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB9A_CANFA (Ras-related protein Rab-9A OS=Canis familiaris GN=RAB9A PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 54/182 (29.67%), Postives = 95/182 (52.20%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG--DPNSHFVESPALA 594
            FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ GNK+D+  RQV  ++     + N    Y+E SAK   N    F    R++    D + H +++  ++
Sbjct:    8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSDHLIQTDTVS 189          
The following BLAST results are available for this feature:
BLAST of FC920872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB9A_MOUSE3.594e-2231.46Ras-related protein Rab-9A OS=Mus musculus GN=Rab9... [more]
RAB30_MOUSE1.784e-2132.77Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN1.784e-2132.77Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN1.784e-2132.77Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]
RAB7A_DICDI2.330e-2131.90Ras-related protein Rab-7A OS=Dictyostelium discoi... [more]
RAB19_XENLA2.330e-2132.98Ras-related protein Rab-19 OS=Xenopus laevis GN=ra... [more]
RBH1C_ARATH3.043e-2136.59Ras-related protein RABH1C OS=Arabidopsis thaliana... [more]
RB11C_DICDI3.043e-2133.94Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB19_XENTR3.043e-2132.98Ras-related protein Rab-19 OS=Xenopus tropicalis G... [more]
RAB9A_CANFA5.190e-2129.67Ras-related protein Rab-9A OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32014B04EF RVDevelop1 Citrus clementina cDNA clone C32014B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920872 ID=FC920872; Name=FC920872; organism=Citrus clementina; type=EST; length=693bp
CGAACTTCGTATTCTTTCGCACACAGTACTCAACTCTTGGCTCTGCCAAG
TCAGCAAACTGTTGATTACCCGAGCTTCAAACTCGTCATAGTCGGCGACG
GTGGCACTGGGAAGACTACCTTTGTGAAGAGGCATCTGACTGGGGAGTTT
GAGAAGAAGTATGAACCAACTATTGGTGTGGAGGTTCATCCGTTGGATTT
CTTTACAAATTGTGGCAAAATCCGTTTCTACTGCTGGGACACTGCTGGCC
AGGAAAAGTTTGGTGGTCTTAGAGATGGTTATTACATCCATGGGCAATGT
GCCATCATTATGTTTGATGTTACTGCCCGATTGACATACAAGAATGTCCC
CACTTGGCACCGTGATCTTTGCCGGGTGTGTGAAAATATACCGATTGTTC
TCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGCAAAGCAG
GTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTTCTGCCAA
GAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGGAAGCTTG
CTGGGGACCCAAATTCGCACTTCGTGGAATCTCCTGCTCTCGCTCCTCCA
GAAGTACAGATTGACTTAGCTGCACAGCACAACATGAAGCCGAGCTTGCC
GCAGCAGCTAGCCAGCCGCTTCCTGATGACGATGATGATGCAT
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