FC920872

Overview
NameFC920872
Unique NameFC920872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14105 contig Ccv1_Contig14105:67..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB7_SOYBN (Ras-related protein Rab7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 53/188 (28.19%), Postives = 95/188 (50.53%), Query Frame = 1
Query:   79 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNS---HFVESPALAPPE 603
            K++++GD G GKT+ + +++  +F ++Y+ TIG +    +   +   +    WDTAGQE+F  L   +Y    C ++++DV    ++  +  WH +  +          P +L GNK+D+    +R V  K+       K N+ Y+E SAK +YN +  FL +A+    + +    +F   P  A PE
Sbjct:   10 KVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLENWHEEFLKQANPPDPRAFPFILLGNKIDIDGGNSRVVSEKKAKDWCAAKGNIPYFETSAKEDYNVDAAFLCIAKAALANEHEQDIYFQGIPEAAVPE 197          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB19_MOUSE (Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 58/178 (32.58%), Postives = 97/178 (54.49%), Query Frame = 1
Query:   49 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPNSH 570
            S + VDY  FK++++GD   GKT  V+   +G + +  + TIGV+        +  K++   WDTAGQE+F  +   YY     AII +D+T R T+++VP W  ++ +    N+ I+L GNK D+ + R V  +      +K+  L   E SAK + N ++ F+ +A++L    + H
Sbjct:   10 SDENVDY-LFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKHGLLAVLETSAKESRNIDEVFVLMAKELIARNSLH 186          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB18_DICDI (Ras-related protein Rab-18 OS=Dictyostelium discoideum GN=rab18 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 58/173 (33.53%), Postives = 91/173 (52.60%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNSHFVESP 585
            +K++++GD   GKT+ VKR     F++    TIGVE    +   +  K+    WDTAGQEKF  L   YY      I+ +DVT R ++ N+  W  ++       N+  +L GNK+D +NR+V  ++   F +KK + + E SAKS    ++ F  LA+K+   P +     P
Sbjct:    7 YKVLLIGDSDVGKTSIVKRFSDDTFDEDLLCTIGVEFKMKEVKVDGKKVDLCIWDTAGQEKFRALISSYYRGAHGIILTYDVTKRESFDNLNYWLNEVENFANRSNLVKLLVGNKIDKENREVTREEGAEFAKKKAMLFIECSAKSKIGIQQAFEELAQKIIEIPQNTSSSQP 179          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 57/176 (32.39%), Postives = 94/176 (53.41%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL-----AGDPNSHFVE 579
            FKL+++GD G GKT  + R     F   +  TIG++           KI+   WDTAGQE+F  +   YY      ++++D+T   +++N+  W R++     E++  +L GNK D+ +++V  K K     R+  ++++E SAK+N N EK FL LA  +       +PNS  V+
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENVD 185          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 57/176 (32.39%), Postives = 94/176 (53.41%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL-----AGDPNSHFVE 579
            FKL+++GD G GKT  + R     F   +  TIG++           KI+   WDTAGQE+F  +   YY      ++++D+T   +++N+  W R++     E++  +L GNK D+ +++V  K K     R+  ++++E SAK+N N EK FL LA  +       +PNS  V+
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENVD 185          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 57/176 (32.39%), Postives = 94/176 (53.41%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL-----AGDPNSHFVE 579
            FKL+++GD G GKT  + R     F   +  TIG++           KI+   WDTAGQE+F  +   YY      ++++D+T   +++N+  W R++     E++  +L GNK D+ +++V  K K     R+  ++++E SAK+N N EK FL LA  +       +PNS  V+
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENVD 185          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20
Identity = 60/170 (35.29%), Postives = 91/170 (53.53%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYN----FEKPFLYLARKLAGDP 561
            FK ++VGD   GK+  + + +   F    + TIGVE        N  +I+   WDTAGQEKF  +   YY    CA+I++D+T R +++++ +W  D CR     ++  VL GNK D++ NRQV   +   F  K  L ++E SAK+  N    FEK    + +KL  +P
Sbjct:   25 FKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTD-CRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLESNP 193          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB5B_CHICK (Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.278e-19
Identity = 64/193 (33.16%), Postives = 97/193 (50.26%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDPNSHFVESPALAPPEVQIDLAAQHNMKPS 645
            FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T + T+    TW ++L R    +I I L GNK D+   R V+ ++   +   N L + E SAK+  N    FL +A+KL   P S    +   A     +DL  Q     S
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL---PKSEPQSTSGAAGRSRGVDLHEQTQQNKS 210          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.278e-19
Identity = 53/153 (34.64%), Postives = 82/153 (53.59%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPF 528
            FKL+I+GD G GK++ + R     F   Y  TIGV+        N  K++   WDTAGQE+F  +   YY      I+++DVT+  ++ NV  W  ++ + C+++  +L GNK D   R+V   +    F  +  +Q +E SAK N N E+ F
Sbjct:    9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 161          
BLAST of FC920872 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.278e-19
Identity = 53/153 (34.64%), Postives = 82/153 (53.59%), Query Frame = 1
Query:   76 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPF 528
            FKL+I+GD G GK++ + R     F   Y  TIGV+        N  K++   WDTAGQE+F  +   YY      I+++DVT+  ++ NV  W  ++ + C+++  +L GNK D   R+V   +    F  +  +Q +E SAK N N E+ F
Sbjct:    9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 161          
The following BLAST results are available for this feature:
BLAST of FC920872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB7_SOYBN5.738e-2028.19Ras-related protein Rab7 OS=Glycine max PE=2 SV=1[more]
RAB19_MOUSE5.738e-2032.58Ras-related protein Rab-19 OS=Mus musculus GN=Rab1... [more]
RAB18_DICDI5.738e-2033.53Ras-related protein Rab-18 OS=Dictyostelium discoi... [more]
RAB10_PONAB5.738e-2032.39Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE5.738e-2032.39Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN5.738e-2032.39Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB2B_DICDI9.788e-2035.29Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB5B_CHICK1.278e-1933.16Ras-related protein Rab-5B OS=Gallus gallus GN=RAB... [more]
RAB35_RAT1.278e-1934.64Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE1.278e-1934.64Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]

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Properties
Property NameValue
Genbank descriptionC32014B04EF RVDevelop1 Citrus clementina cDNA clone C32014B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920872 ID=FC920872; Name=FC920872; organism=Citrus clementina; type=EST; length=693bp
CGAACTTCGTATTCTTTCGCACACAGTACTCAACTCTTGGCTCTGCCAAG
TCAGCAAACTGTTGATTACCCGAGCTTCAAACTCGTCATAGTCGGCGACG
GTGGCACTGGGAAGACTACCTTTGTGAAGAGGCATCTGACTGGGGAGTTT
GAGAAGAAGTATGAACCAACTATTGGTGTGGAGGTTCATCCGTTGGATTT
CTTTACAAATTGTGGCAAAATCCGTTTCTACTGCTGGGACACTGCTGGCC
AGGAAAAGTTTGGTGGTCTTAGAGATGGTTATTACATCCATGGGCAATGT
GCCATCATTATGTTTGATGTTACTGCCCGATTGACATACAAGAATGTCCC
CACTTGGCACCGTGATCTTTGCCGGGTGTGTGAAAATATACCGATTGTTC
TCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGCAAAGCAG
GTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTTCTGCCAA
GAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGGAAGCTTG
CTGGGGACCCAAATTCGCACTTCGTGGAATCTCCTGCTCTCGCTCCTCCA
GAAGTACAGATTGACTTAGCTGCACAGCACAACATGAAGCCGAGCTTGCC
GCAGCAGCTAGCCAGCCGCTTCCTGATGACGATGATGATGCAT
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