FC920873
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS4_SULTO (30S ribosomal protein S4P OS=Sulfolobus tokodaii GN=rps4p PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25 Identity = 63/168 (37.50%), Postives = 98/168 (58.33%), Query Frame = 1 Query: 73 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 576 + ++ P P+ + L+ E L+G+YGLR KRELW Q + + R+ AR LL L R + L+++++R G +E+ LD +L L EN+LERRLQT+V+K G+A++I+ AR LI HI +G + V P ++V + I+F TSPF P + N+ Sbjct: 9 RKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQHPPTQQGEENV 174
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25 Identity = 67/159 (42.14%), Postives = 93/159 (58.49%), Query Frame = 1 Query: 73 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 549 K ++ P P+ KERLD E LV +Y L+ K+ELW+ + L R AR LL K E LL+R+ R G L E + LD VL+LT+++ LERRLQTLVFK G+A++I AR LI HI V Q++ PS++V + + I + SPF + Sbjct: 9 KRYETPSHPWIKERLDRERVLVQKYALKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IERAQLLQRLARLGILPEGAH-LDDVLSLTIDDILERRLQTLVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDGITYGRASPFANSQ 164
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25 Identity = 67/155 (43.23%), Postives = 93/155 (60.00%), Query Frame = 1 Query: 73 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 537 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K E E LL R+ R G L E LD VL+LTVE+ LERRLQT+V+K G+A+++ AR LI HI V Q++ PS++V + + I ++ TSPF Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLSRLKRLGLLPEDA-VLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDKITYARTSPF 160
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS4_THEGJ (30S ribosomal protein S4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4p PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.075e-25 Identity = 67/155 (43.23%), Postives = 92/155 (59.35%), Query Frame = 1 Query: 73 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 537 K ++ P P+ KERLD E L +Y L+ K+ELWR + L R AR LL K E + LL+R+HR G L + LD VL+LTVE+ LERRLQTLV+K G+A++I AR LI HI V Q++ P ++V + + I ++ SPF Sbjct: 9 KKYETPSHPWIKERLDRERVLKRKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLHRLGLLP-ADAALDDVLSLTVEDVLERRLQTLVYKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLREEEDTITYAKNSPF 160
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25 Identity = 67/155 (43.23%), Postives = 93/155 (60.00%), Query Frame = 1 Query: 73 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 537 K ++ P P+ KERLD E L+ +Y L+ K+ELWR + L R AR LL K E LL+R++R G L + LD VL+LTVE+ L+RRLQT+VFK G+A++I AR LI HI V Q++ P ++V + + I +S TSPF Sbjct: 9 KKYETPSHPWIKERLDRERVLMKKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERAQLLQRLNRLGLLP-ADAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTSPF 160
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS4_PYRFU (30S ribosomal protein S4P OS=Pyrococcus furiosus GN=rps4p PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25 Identity = 66/155 (42.58%), Postives = 93/155 (60.00%), Query Frame = 1 Query: 73 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 537 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K E E LL R+ R G L E LD VL+LT+E+ LERRLQT+V+K G+A+++ AR LI HI V Q++ PS++V + + I ++ TSPF Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25 Identity = 66/155 (42.58%), Postives = 93/155 (60.00%), Query Frame = 1 Query: 73 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 537 K ++ P P+ KERLD E L+ +Y L+ K+ELW+ + L R AR LL K E E LL R+ R G L E LD VL+LT+E+ LERRLQT+V+K G+A+++ AR LI HI V Q++ PS++V + + I ++ TSPF Sbjct: 9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS4_METTP (30S ribosomal protein S4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps4p PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25 Identity = 62/164 (37.80%), Postives = 97/164 (59.15%), Query Frame = 1 Query: 73 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGR 558 KT+ +PR+P+E +R+ E+ L+ YGLR KRELW+ + L + R R LL + R E A++ R+ R+G L++ + LD +L+L + + LERRLQT V++ G+A +I AR I HI+V Q V +PS++V+ + I++ SP G P R Sbjct: 9 KTYDRPRKPWEADRMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKARGEARADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQVAGQRVTVPSYLVKRGDEMTIDYYAGSPLAREGHPER 171
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS4_ARCFU (30S ribosomal protein S4P OS=Archaeoglobus fulgidus GN=rps4p PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24 Identity = 63/162 (38.89%), Postives = 98/162 (60.49%), Query Frame = 1 Query: 61 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL----DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 534 + + K + P P++K RL+ E++LV +YGLR KRELWR Q L + R ARDLL ++ + + +++++++ G L E+ LD +L L+VE+FLERRLQT+V++ G+A++I AR I HI V + V PSF+V + + I F SP Sbjct: 5 KRHRKKYTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLAEIGLPGKEGEIAKAKAQTVIKKLNKMGILPENAT-LDDILNLSVEDFLERRLQTMVYRQGLARTIKQARQFITHGHIAVDGRRVTSPSFIVTKELESKISFYRNSP 165
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS4_AERPE (30S ribosomal protein S4P OS=Aeropyrum pernix GN=rps4p PE=3 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.768e-24 Identity = 59/155 (38.06%), Postives = 92/155 (59.35%), Query Frame = 1 Query: 73 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 537 K ++ P+ P+ KERL+ E L+G YGLR K+ELW+ + R R+ AR LL L + R L+ ++R G ++ +D VL + E LERRLQT+V+K G+AK+I+ AR L+ HI + + V P ++V + +K I+++ SPF Sbjct: 9 KKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPEVRREA--SRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPF 161 The following BLAST results are available for this feature:
BLAST of FC920873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920873 ID=FC920873; Name=FC920873; organism=Citrus clementina; type=EST; length=703bpback to top |