FC920873

Overview
NameFC920873
Unique NameFC920873
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig853 contig Ccv1_Contig853:56..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS4_NATPD (30S ribosomal protein S4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 57/155 (36.77%), Postives = 83/155 (53.55%), Query Frame = 1
Query:   73 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE-GEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 534
            K ++ P  P++ ER+  E  L+  YGL  K ELWR Q  L   R  AR L+   + +     E G   L R+ R G L++ ++ LD +L+L V + LERRLQT+ ++ G+  +   AR  I   H+ V    V+ PS+ V V  +  IEF  TSP
Sbjct:    8 KFYETPNHPFQGERIAEEGDLLSRYGLVNKEELWRAQSELRDYRREARRLIGEAQGDTVAAAEAGSEFLARLKRIGVLDD-EDSLDDILSLDVTDILERRLQTVAYRKGLGNTPQQARQFIAHGHVTVNGARVSAPSYKVDVAEEGEIEFDETSP 161          
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS4_UNCMA (30S ribosomal protein S4P OS=Uncultured methanogenic archaeon RC-I GN=rps4p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.472e-18
Identity = 51/159 (32.08%), Postives = 90/159 (56.60%), Query Frame = 1
Query:   73 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE-----KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 534
            K +  P  P++K R+D E  LV +YGLR K+ +W+    L + R+ AR LL +       ++   I + + +++++   G L+E   KL+ VLAL V++ +ERRLQT++++ G A SI  AR  I   HI +  + + +P ++V    +  + + + SP
Sbjct:    9 KLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMSAGNLPEDSHYIRDAQNIVKKLQTLGILKEDA-KLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGRKITVPGYLVLKSEEDMLSYYVGSP 166          
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS4_METST (30S ribosomal protein S4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18
Identity = 51/149 (34.23%), Postives = 85/149 (57.05%), Query Frame = 1
Query:   73 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEF 519
            K +  P  P+  +R+  E RL  +YGL+ K+E+W+ +  + R R  AR +L +D     R  + + LL  + R GF+  +  KL+ VL L VE+ L RRLQ+LVFK G++ +   AR+ +   HI +  + +N P  +V    +++I+F
Sbjct:    9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--RADKEKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKADEENIDF 154          
BLAST of FC920873 vs. ExPASy Swiss-Prot
Match: RS4_METS3 (30S ribosomal protein S4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18
Identity = 57/158 (36.08%), Postives = 85/158 (53.80%), Query Frame = 1
Query:   61 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 534
            R   K +  P  P+  ER+  E +L+ +YGL+ K+E+W+    + R    AR LL  D    +   E   LL  + R G L E    L+ VL LTVE+ L RRLQT+V+K G+A++   AR+ +   HI +  + +N PS+VV    +  I F  +SP
Sbjct:    5 RKSRKKYNTPPHPWNAERIKNENKLMTKYGLKNKKEIWKADTLVRRYSREARYLLGFDMDQMQD--EKLELLGHLARTGVLPEGA-ALEEVLNLTVEDILRRRLQTIVYKKGLARTPKEARMFVVHGHITLNGKKINSPSYVVLKGQEDEIGFYPSSP 159          
The following BLAST results are available for this feature:
BLAST of FC920873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_NATPD1.893e-1836.7730S ribosomal protein S4P OS=Natronomonas pharaoni... [more]
RS4_UNCMA2.472e-1832.0830S ribosomal protein S4P OS=Uncultured methanogen... [more]
RS4_METST7.193e-1834.2330S ribosomal protein S4P OS=Methanosphaera stadtm... [more]
RS4_METS37.193e-1836.0830S ribosomal protein S4P OS=Methanobrevibacter sm... [more]

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Properties
Property NameValue
Genbank descriptionC32014B05EF RVDevelop1 Citrus clementina cDNA clone C32014B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920873 ID=FC920873; Name=FC920873; organism=Citrus clementina; type=EST; length=703bp
AGGGGGAGAGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGCACGT
TTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCCCT
ATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGAGTATGGG
CTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATACGCACTGAGCCGCAT
CCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGAC
GTATTTTTGAGGGTGAGGCCCTTCTCAGGAGGATGCACAGGTATGGCTTC
TTGGAAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGA
GAACTTTCTTGAGCGTCGTCTTCAGACCCTTGTGTTCAAGAGTGGCATGG
CTAAGTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGG
GTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTC
CCAGAAGCACATTGAATTCTCACTCACAAGTCCATTTGGAGGCGGGCGCC
CCGGAAGAGTGAAGAGAAGGAACATTAAGGCTGCTGCCAAGAAGGCCGCA
GGTGGAGATGGAGATGAAGAGGATGAAGAATAATTACCTTGTGTGAGCAG
ATAGTTTTTTTATGGTTACAGTAGGACTCTGGCTGAACTTGCAATCGACT
TAT
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