FC920876

Overview
NameFC920876
Unique NameFC920876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9492 contig Ccv1_Contig9492:10..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920876 vs. ExPASy Swiss-Prot
Match: PER69_ARATH (Peroxidase 69 OS=Arabidopsis thaliana GN=PER69 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.600e-22
Identity = 64/172 (37.21%), Postives = 89/172 (51.74%), Query Frame = 1
Query:  151 MNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 666
            + FY + C   E I++  V+   +     A   LR  FHDC V  CD S+LL       SE+    +  +R F  IE  K  +E+ CP  VSCADIL L+ RD VV  GG    +  GR DGR S+A   +  LP  +DS++   + FAA  ++   LV L+G H++G   C
Sbjct:   39 VGFYGNRCRNVESIVRSVVQSHVRSIPANAPGILRMHFHDCFVHGCDGSVLLAGNT---SERTAVPNRSLRGFEVIEEAKARLEKACPRTVSCADILTLAARDAVVLTGGQRWEVPLGRLDGRISQAS--DVNLPGPSDSVAKQKQDFAAKTLNTLDLVTLVGGHTIGTAGC 205          
BLAST of FC920876 vs. ExPASy Swiss-Prot
Match: PER1_WHEAT (Peroxidase OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.211e-21
Identity = 66/175 (37.71%), Postives = 88/175 (50.29%), Query Frame = 1
Query:  145 LVMNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFG-MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 666
            L   FY  +CP+A   IK  V            S LR  FHDC    CDAS+LL     T  E+    + G +R F  I+NIK  +E  C   VSCADIL ++ RD VVALGGP   +  GRRD   + A +    LP  + S S +   F    ++   +VAL G+H++G+  C
Sbjct:   25 LSSTFYDTSCPRALVAIKSGVAAAVSSDPRMGASLLRLHFHDCF--GCDASVLL-----TGMEQNAGPNVGSLRGFGVIDNIKTQLESVCKQTVSCADILTVAARDSVVALGGPSWTVPLGRRDSTTASASLANSDLPGPSSSRSQLEAAFLKKNLNTVDMVALSGAHTIGKAQC 192          
BLAST of FC920876 vs. ExPASy Swiss-Prot
Match: PER1_MAIZE (Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.926e-21
Identity = 61/178 (34.27%), Postives = 92/178 (51.69%), Query Frame = 1
Query:  145 LVMNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD---RSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA-EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 666
            L + FY  +CP AE ++++ V   + +    A   +R  FHDC V+ CD S+LL +      + E D    +  +R F  I+  K AVE+ CP  VSCADI+  + RD +   G     +  GRRDGR S A E ++  LP    +   + + F A  +    +V L G+H+VGR+ C
Sbjct:   35 LRVGFYDTSCPNAEALVRQAVAAAFAKDAGIAAGLIRLHFHDCFVRGCDGSVLL-TVNPGGGQTERDALPNNPSLRGFDVIDAAKTAVEQSCPRTVSCADIVAFAARDSISLTGSVSYQVPAGRRDGRVSNATETVD--LPPPTSTAQSLTDLFKAKELSVEDMVVLSGAHTVGRSFC 209          
BLAST of FC920876 vs. ExPASy Swiss-Prot
Match: PERA_IPOBA (Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.136e-17
Identity = 55/160 (34.38%), Postives = 79/160 (49.38%), Query Frame = 1
Query:  193 IKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEM-DRSFGMRNFRYIENIKEAVERECPGV-VSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 666
            +KE V            S +R  FHDC V  CDA LLL+ T     E+     +  +R F  IE  K+ V+ + P + VSCADIL ++ RD      G    +  GR+D R +        L   N++++  L +FAA G +   +VALLGSH++G   C
Sbjct:   75 VKEVVVAAINAEARMGASLIRLFFHDCFVDGCDAGLLLNDTATFTGEQTAAGNNNSVRGFAVIEQAKQNVKTQMPDMSVSCADILSIAARDSFEKFSGSTYTVTLGRKDARTANFTGANTQLVGPNENLTSQLTKFAAKGFNGTEMVALLGSHTIGFARC 234          
BLAST of FC920876 vs. ExPASy Swiss-Prot
Match: PER2_SOLLC (Suberization-associated anionic peroxidase 2 OS=Solanum lycopersicum GN=TAP2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.142e-16
Identity = 48/144 (33.33%), Postives = 74/144 (51.39%), Query Frame = 1
Query:  244 SWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD--RSFGMRNFRYIENIKEAVERECPGV-VSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 666
            S +R  FHDC V  CD  +LLD    T + ++     +  +R F  I   K++V   CP + VSCADIL ++ RD +  LGG    +  GR D   +        LP  +D+++V +++F+        +VAL G+H+VG   C
Sbjct:  102 SLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNNNSVRGFEVIAQAKQSVVDSCPNISVSCADILAIAARDSLAKLGGQTYTVALGRSDATTANFSGAINQLPAPSDNLTVQIQKFSDKNFTVREMVALAGAHTVGFARC 245          
BLAST of FC920876 vs. ExPASy Swiss-Prot
Match: PER1_SOLLC (Suberization-associated anionic peroxidase 1 OS=Solanum lycopersicum GN=TAP1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.142e-16
Identity = 50/144 (34.72%), Postives = 73/144 (50.69%), Query Frame = 1
Query:  244 SWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD--RSFGMRNFRYIENIKEAVERECPGV-VSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 666
            S +R  FHDC V  CD  +LLD    T + ++     +   R +  I   K++V   CP V VSCADIL ++ RD V  LGG    +  GR D R +        LP   D+++V +++F+        +VAL G+H+VG   C
Sbjct:  103 SLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNANSARGYEVIAQAKQSVINTCPNVSVSCADILAIAARDSVAKLGGQTYSVALGRSDARTANFSGAINQLPAPFDNLTVQIQKFSDKNFTLREMVALAGAHTVGFARC 246          
BLAST of FC920876 vs. ExPASy Swiss-Prot
Match: PERX_SOLTU (Suberization-associated anionic peroxidase OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 49/144 (34.03%), Postives = 72/144 (50.00%), Query Frame = 1
Query:  244 SWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD--RSFGMRNFRYIENIKEAVERECPGV-VSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 666
            S +R  FHDC V  CD  +LLD    T + ++     +   R +  I   K++V   CP + VSCADIL ++ RD V  LGG    +  GR D R +        LP   D+++V +++F         +VAL G+H+VG   C
Sbjct:  102 SLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNANSARGYEVIAQAKQSVIDTCPNISVSCADILAIAARDSVAKLGGQTYNVALGRSDARTANFTGALTQLPAPFDNLTVQIQKFNDKNFTLREMVALAGAHTVGFARC 245          
BLAST of FC920876 vs. ExPASy Swiss-Prot
Match: PERN_IPOBA (Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 49/163 (30.06%), Postives = 73/163 (44.79%), Query Frame = 1
Query:  193 IKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD-RSFGMRNFRYIENIKEAVERECPGV-VSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKL 675
            +KE V            S +R  FHDC V  CD  +LL+ T     E+     S  +R F  I+  K   + +C    VSCAD+L ++ RD           +  GR+D R +        LP   D++S+   +FA  G +   +V L G+H+VG + C  L
Sbjct:   76 VKEIVDAAITAETRMGASLIRLHFHDCFVDGCDGGILLNDTANFTGEQGAPANSNSVRGFSVIDQAKRNAQTKCADTPVSCADVLAIAARDAFRKFTNQTYNITLGRQDARTANLTGANTQLPAPFDNLSIQTAKFADKGFNQREMVVLAGAHTVGFSRCAVL 238          
The following BLAST results are available for this feature:
BLAST of FC920876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER69_ARATH7.600e-2237.21Peroxidase 69 OS=Arabidopsis thaliana GN=PER69 PE=... [more]
PER1_WHEAT2.211e-2137.71Peroxidase OS=Triticum aestivum PE=2 SV=1[more]
PER1_MAIZE4.926e-2134.27Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1[more]
PERA_IPOBA1.136e-1734.38Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1[more]
PER2_SOLLC2.142e-1633.33Suberization-associated anionic peroxidase 2 OS=So... [more]
PER1_SOLLC2.142e-1634.72Suberization-associated anionic peroxidase 1 OS=So... [more]
PERX_SOLTU2.368e-1534.03Suberization-associated anionic peroxidase OS=Sola... [more]
PERN_IPOBA7.618e-1430.06Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32014B08EF RVDevelop1 Citrus clementina cDNA clone C32014B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920876 ID=FC920876; Name=FC920876; organism=Citrus clementina; type=EST; length=675bp
TCTAAACCAAGGTTGGTCACCTTTAGTGAGTGAAGAGTAGAAGAGACAAT
GGGTACGAAAGCTGTCTTCTTGCTTTTAGCTTTGCTTTCCTTCTCAGCTG
TGTCTCTGAGGTCTGCTTTGGCAGAAAATGAAGAGGACCCAGGTCTTGTT
ATGAATTTTTACAAGGATACATGCCCTCAGGCCGAGGACATTATCAAGGA
ACAAGTTAAGCTTCTGTACAAGCGCCACAAGAACACTGCATTTTCTTGGC
TTAGAAACATTTTCCATGACTGTGCTGTCCAGTCTTGTGATGCTTCACTG
CTTCTGGACTCGACAAGAAAGACCTTGTCTGAGAAGGAAATGGACAGGAG
CTTTGGTATGAGGAACTTCAGGTACATTGAGAACATCAAAGAAGCTGTTG
AAAGAGAGTGCCCTGGTGTTGTTTCCTGTGCTGATATTCTTGTCCTGTCC
GGTAGAGATGGCGTTGTTGCGCTTGGAGGCCCTTACATTCCTCTCAAGAC
AGGAAGAAGAGATGGCAGAAAAAGCAGAGCAGAGATACTTGAGCAGTATC
TCCCAGATCACAATGACAGCATGTCTGTTGTTCTTGAGAGGTTTGCAGCC
ATTGGCATTGACGCCCCTGGACTTGTTGCTCTGCTAGGATCTCACAGTGT
TGGCAGAACTCATTGTGTGAAGCTG
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