FC920879

Overview
NameFC920879
Unique NameFC920879
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14677 contig Ccv1_Contig14677:48..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 5.831e-57
Identity = 111/167 (66.47%), Postives = 128/167 (76.65%), Query Frame = 1
Query:  124 KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMG--------VVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAHVVAHGYTKGDGLGAEIIGTF 600
            KDY +PPPAPL +  EL  WS YRA IAEFIAT LFLYI+V TV+G        V  ++  CS VGI GIAWAFGGMIF+LVYCTAGISGGHINPAVT GLFLARK+SL RA+ Y++ QCLGAICG G+VKGF  +  Y R  GGA+ ++ GY+KG GLGAEIIGTF
Sbjct:   18 KDYTDPPPAPLIDVEELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIIAQCLGAICGVGLVKGFQ-SSYYARYGGGANELSDGYSKGTGLGAEIIGTF 183          
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.299e-56
Identity = 111/174 (63.79%), Postives = 128/174 (73.56%), Query Frame = 1
Query:  103 AAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKS--------NTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAHVVAHGYTKGDGLGAEIIGTF 600
            AA   +GKDY +PPPAPL +  EL  WS YRA IAEF+AT LFLYI+V TV+G            +  C  VG+ GIAWAFGGMIF+LVYCTAG+SGGHINPAVT GLFLARK+SL RAL Y+V QCLGAICG G+VKGF  A  Y R  GGA+ ++ GY+KG GL AEIIGTF
Sbjct:    7 AAAAHEGKDYSDPPPAPLVDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKGFQSA-FYVRYGGGANELSAGYSKGTGLAAEIIGTF 179          
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.216e-56
Identity = 112/176 (63.64%), Postives = 128/176 (72.73%), Query Frame = 1
Query:   97 GTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVK--------SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAHVVAHGYTKGDGLGAEIIGTF 600
            G AA     KDY +PPPAPL +  EL SWS YRA IAEFIAT LFLYI+V TV+G           ++  C  VG+ GIAWAFGGMIF+LVYCTAGISGGHINPAVT GLFLARK+SL RA+ Y+V QCLGAICG G+VK F  A  + R  GGA+ +A GY+KG GL AEIIGTF
Sbjct:   10 GGAAGEFAAKDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAICGVGLVKAFQSA-YFNRYGGGANTLAAGYSKGTGLAAEIIGTF 184          
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 2.216e-56
Identity = 111/167 (66.47%), Postives = 126/167 (75.45%), Query Frame = 1
Query:  124 KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVK--------SNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAHVVAHGYTKGDGLGAEIIGTF 600
            KDY +PPPAPL +  EL SWS YRA IAEFIAT LFLYI+V TV+G           ++  C  VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+SL RAL Y+V QCLGAICG G+VK F  A  + R  GGA+ +A GY++G GLGAEIIGTF
Sbjct:   19 KDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKAFQSA-YFDRYGGGANSLASGYSRGTGLGAEIIGTF 184          
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.779e-56
Identity = 112/176 (63.64%), Postives = 126/176 (71.59%), Query Frame = 1
Query:   97 GTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKS--------NTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAHVVAHGYTKGDGLGAEIIGTF 600
            G  A     KDY +PPPAPL +  EL  WS YRA IAEFIAT LFLYI+V TV+G            +  C  VGI GIAWAFGGMIF+LVYCTAGISGGHINPAVT GLFLARK+SL RAL Y++ QCLGAICG G+VKGF  A  Y R  GGA+ ++ GY+KG GL AEIIGTF
Sbjct:   10 GPEAGEFSAKDYTDPPPAPLIDADELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSA-YYVRYGGGANELSDGYSKGTGLAAEIIGTF 184          
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.779e-56
Identity = 109/169 (64.50%), Postives = 126/169 (74.56%), Query Frame = 1
Query:  124 KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGV----------VKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAHVVAHGYTKGDGLGAEIIGTF 600
            KDY +PPPAPL +  EL SWS YRA IAEFIAT LFLY++V TV+G             ++  C  VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+SL RAL YMV QCLGA+CG G+VK F  A  + R  GGA+ +A GY++G GLGAEI+GTF
Sbjct:   19 KDYTDPPPAPLVDAAELGSWSLYRAVIAEFIATLLFLYVTVATVIGYKHQTDASASGAGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMVAQCLGAVCGVGLVKAFQSA-YFDRYGGGANSLASGYSRGAGLGAEIVGTF 186          
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 4.936e-56
Identity = 112/176 (63.64%), Postives = 126/176 (71.59%), Query Frame = 1
Query:   97 GTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKS--------NTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAHVVAHGYTKGDGLGAEIIGTF 600
            G  A     KDY +PPPAPL +  EL  WS YRA IAEFIAT LFLYI+V TV+G            +  C  VGI GIAWAFGGMIF+LVYCTAGISGGHINPAVT GLFLARK+SL RAL Y++ QCLGAICG G+VKGF  A  Y R  GGA+ ++ GY+KG GL AEIIGTF
Sbjct:    9 GPEAGEFSAKDYTDPPPAPLIDAEELTQWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSA-YYVRYGGGANELSDGYSKGTGLAAEIIGTF 183          
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 6.447e-56
Identity = 110/165 (66.67%), Postives = 127/165 (76.97%), Query Frame = 1
Query:  124 KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGV-VKSNTK-----CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAHVVAHGYTKGDGLGAEIIGTF 600
            +DY +PPPAP  +  ELK WSFYRA IAEF+AT LFLYI+VLTV+G  ++S+T      C  VGI GIAWAFGGMIF+LVYCTAGISGGHINPAVT GLFLARK+SL RAL Y++ QCLGAICG G VK F  +  Y R  GGA+ +A GY+ G GL AEIIGTF
Sbjct:   16 RDYQDPPPAPFIDGAELKKWSFYRAVIAEFVATLLFLYITVLTVIGYKIQSDTDAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRALLYIIAQCLGAICGVGFVKAFQ-SSYYTRYGGGANSLADGYSTGTGLAAEIIGTF 179          
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 8.419e-56
Identity = 110/161 (68.32%), Postives = 125/161 (77.64%), Query Frame = 1
Query:  124 KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMG--VVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAHVVAHGYTKGDGLGAEIIGTF 600
            KDY +PPPAPLF+ GEL+ WSFYRA IAEFIAT LFLYI+V TV+G  V  S  +C  VG  GIAWAFGGMIF+LVYCTAGISGGHINPAVT GL LARK+S+ RA+ Y+V QCLG I G G+VKG M   QY    GGA++VA GY+ G  LGAEIIGTF
Sbjct:   15 KDYTDPPPAPLFDVGELRLWSFYRALIAEFIATLLFLYITVATVIGYKVQSSADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIM-KHQYNANGGGANMVASGYSTGTALGAEIIGTF 174          
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.100e-55
Identity = 110/165 (66.67%), Postives = 125/165 (75.76%), Query Frame = 1
Query:  124 KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGV-VKSNTK-----CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAHVVAHGYTKGDGLGAEIIGTF 600
            +DY +PPP P F+  EL  WS YRA IAEF+AT LFLYI+VLTV+G  ++S+TK     C  VGI GIAWAFGGMIF+LVYCTAGISGGHINPAVT GLFLARK+SL RA+ YMV QCLGAICG G VK F  +  Y R  GGA+ +A GY  G GL AEIIGTF
Sbjct:   14 RDYEDPPPTPFFDADELTKWSLYRAVIAEFVATLLFLYITVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQ-SSYYDRYGGGANSLADGYNTGTGLAAEIIGTF 177          
The following BLAST results are available for this feature:
BLAST of FC920879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
PIP22_ORYSJ5.831e-5766.47Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP25_MAIZE1.299e-5663.79Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP21_ORYSJ2.216e-5663.64Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP21_MAIZE2.216e-5666.47Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP23_MAIZE3.779e-5663.64Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP22_MAIZE3.779e-5664.50Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP24_MAIZE4.936e-5663.64Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP21_ARATH6.447e-5666.67Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP26_ORYSJ8.419e-5668.32Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP22_ARATH1.100e-5566.67Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]

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Properties
Property NameValue
Genbank descriptionC32014C01EF RVDevelop1 Citrus clementina cDNA clone C32014C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920879 ID=FC920879; Name=FC920879; organism=Citrus clementina; type=EST; length=601bp
TGACTATTTTGTGTTTTTGAGGGCGTAGCAGAAATGGAAGGCAAAGAAGA
GGATGTTAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGATTGGGA
CGGCGGCTCAGACCCAAGATGGCAAGGACTACGTTGAACCCCCACCGGCG
CCGCTCTTCGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAGGGCCGG
TATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCGTACTGA
CAGTGATGGGCGTCGTCAAGTCCAACACCAAGTGCTCAACCGTCGGCATT
CAAGGGATTGCATGGGCCTTCGGTGGCATGATCTTCGTGCTCGTTTACTG
CACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACACTCGGCC
TGTTCTTGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTACATGGTG
ATGCAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTTAAGGGTTTCAT
GGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCCCACGTCGTAGCTC
ATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGTACTTTT
G
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