FC920879

Overview
NameFC920879
Unique NameFC920879
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14677 contig Ccv1_Contig14677:48..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.349e-12
Identity = 53/147 (36.05%), Postives = 81/147 (55.10%), Query Frame = 1
Query:  166 GELKSWSFYRAGIAEFIATFLFLYISVLTVM--GVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAHVVAHGYTKGDGLGAEIIGTF 600
            G+  S +  +A +AEFIAT LF++  V + +  G + +       G+  IA A    +FV V   A ISGGH+NPAVT GL +   +++   +FY V Q LGA   A ++ GF+  G+    A   H VA G ++ +G+  E++ TF
Sbjct:   10 GDSFSATSIKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGVFYWVAQLLGATV-ACLLLGFVTHGK----AIPTHAVA-GISELEGVVFEVVITF 150          
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.349e-12
Identity = 49/143 (34.27%), Postives = 72/143 (50.35%), Query Frame = 1
Query:  169 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAHVVAHGYTKGDGLGAEIIGT 597
            EL+S +F RA +AEF+AT LF++  + + +         S   +  IA AFG  I  LV     +SG HINPAVT+   +   +S  RA FY+  Q LGA+ GA ++         G LA   + + +  T G  +  E+  T
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSAL-----QWASSPPSVLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEIRGDLA--VNALHNNATAGQAVTVELFLT 138          
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.375e-12
Identity = 43/120 (35.83%), Postives = 62/120 (51.67%), Query Frame = 1
Query:  169 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLA 528
            EL+S SF+RA  AEF AT  +++  +   +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA+ Y+V Q LGA+ GA V+         G LA
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGLGASLRWAPG-----PLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLA 117          
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.375e-12
Identity = 50/143 (34.97%), Postives = 69/143 (48.25%), Query Frame = 1
Query:  169 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAHVVAHGYTKGDGLGAEIIGT 597
            EL+S SF+RA  AEF AT  +++      +G     T    + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  YM  Q LGA+ GA V+         G LA   + +  G + G     EI  T
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWTP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLA--LNTLHPGVSVGQATTVEIFLT 138          
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.713e-12
Identity = 43/120 (35.83%), Postives = 61/120 (50.83%), Query Frame = 1
Query:  169 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLA 528
            EL+S SF+RA  AEF AT  +++  + + +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA  YM  Q LGA+ GA V+         G LA
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGLGSSLRWAPG-----PLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLA 117          
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.713e-12
Identity = 43/120 (35.83%), Postives = 62/120 (51.67%), Query Frame = 1
Query:  169 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLA 528
            EL+S SF+RA  AEF A+  +++  +   +           + +  +A AFG  +  LV     ISG H+NPAVT    +  ++SL RA+ YMV Q LGA+ GA V+         G LA
Sbjct:    3 ELRSASFWRAICAEFFASLFYVFFGLGASLRWAPG-----PLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLA 117          
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.462e-12
Identity = 52/147 (35.37%), Postives = 79/147 (53.74%), Query Frame = 1
Query:  166 GELKSWSFYRAGIAEFIATFLFLYISVLTVM--GVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAHVVAHGYTKGDGLGAEIIGTF 600
            G+  S +  +A +AEFIAT LF++  V + +  G + +       G+  IA A    +FV V   A  SGGH+NPAVT GL +   +++   LFY V Q LGA     +++ F+  G+    A   H V+ G T+ +G+  EI+ TF
Sbjct:   10 GDSFSVTSIKAYVAEFIATLLFVFAGVGSAIAFGQLTNGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLR-FVTHGK----AIPTHGVSGGTTELEGVVFEIVITF 151          
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = 1
Query:  166 GELKSWSFYRAGIAEFIATFLFLYISVLTVM--GVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAHVVAHGYTKGDGLGAEIIGTF 600
            G+  S +  +A +AEFIAT LF++  V + +  G + +       G+  IA A    +FV V   A ISGGH+NPAVT GL +   +++   LFY + Q LGA     ++K F+  G+    A   H VA G ++ +G+  EI+ TF
Sbjct:   10 GDSFSATSVKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLK-FVTHGK----AIPTHGVA-GISELEGVVMEIVITF 150          
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 44/148 (29.73%), Postives = 73/148 (49.32%), Query Frame = 1
Query:  163 PGELKSWSFYRAGIAEFIATFLFLYISVLTVM--GVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAHVVAHGYTKGDGLGAEIIGTF 600
            PGE       RA  AEF +  +F++    + M  G +  +   +  G+   + +    +FV V   A +SGGH+NPAVT G F+   ++L RA+ Y + Q LGA+    ++K   G      +   A  +++G T  + +  EI+ TF
Sbjct:   11 PGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGG-----METAAFSLSYGVTPWNAVVFEIVMTF 153          
BLAST of FC920879 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 49/148 (33.11%), Postives = 73/148 (49.32%), Query Frame = 1
Query:  163 PGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV--GIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGAHVVAHGYTKGDGLGAEIIGTF 600
            PGEL      +A +AEFI+  +F++    + M   K      T   G+   + A    +FV V   A ISGGH+NPAVT G F+   +SL +A+ Y V Q LG++    ++K   G       A GA  ++ G    + +  EI+ TF
Sbjct:   11 PGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIATGGA-----AVGAFSLSAGVGAWNAVVFEIVMTF 153          
The following BLAST results are available for this feature:
BLAST of FC920879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
TIP21_MAIZE3.349e-1236.05Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
AQP2_MOUSE3.349e-1234.27Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
MIP_SHEEP4.375e-1235.83Lens fiber major intrinsic protein OS=Ovis aries G... [more]
MIP_CANFA4.375e-1234.97Lens fiber major intrinsic protein OS=Canis famili... [more]
MIP_HUMAN5.713e-1235.83Lens fiber major intrinsic protein OS=Homo sapiens... [more]
MIP_BOVIN5.713e-1235.83Lens fiber major intrinsic protein OS=Bos taurus G... [more]
TIP22_MAIZE7.462e-1235.37Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP21_ORYSJ9.746e-1236.05Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP13_ARATH9.746e-1229.73Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP12_ORYSJ9.746e-1233.11Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC32014C01EF RVDevelop1 Citrus clementina cDNA clone C32014C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920879 ID=FC920879; Name=FC920879; organism=Citrus clementina; type=EST; length=601bp
TGACTATTTTGTGTTTTTGAGGGCGTAGCAGAAATGGAAGGCAAAGAAGA
GGATGTTAGACTGGGAGCCAACAAGTTCGCCGAGAGGCAGCCGATTGGGA
CGGCGGCTCAGACCCAAGATGGCAAGGACTACGTTGAACCCCCACCGGCG
CCGCTCTTCGAGCCCGGCGAGCTCAAGTCTTGGTCGTTTTACAGGGCCGG
TATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCGTACTGA
CAGTGATGGGCGTCGTCAAGTCCAACACCAAGTGCTCAACCGTCGGCATT
CAAGGGATTGCATGGGCCTTCGGTGGCATGATCTTCGTGCTCGTTTACTG
CACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACACTCGGCC
TGTTCTTGGCGAGGAAGCTGTCGCTGACACGTGCACTTTTCTACATGGTG
ATGCAGTGTCTGGGAGCCATCTGCGGTGCTGGCGTTGTTAAGGGTTTCAT
GGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTGCCCACGTCGTAGCTC
ATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGTACTTTT
G
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