FC920882
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB6_DICDI (Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3 SV=1) HSP 1 Score: 258.07 bits (658), Expect = 3.444e-68 Identity = 129/174 (74.14%), Postives = 149/174 (85.63%), Query Frame = 2 Query: 110 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLS 631 + +L+KYKLVFLGDQSVGKTSIITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR + SF NT KWI++VR ERG++V+I+LVGNKTDL +KRQVSIEEGEAK++E ++MF ETSAKAGFNIK LFRK+A+ALPG+++ S Sbjct: 1 MESLSKYKLVFLGDQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNERGNNVVIMLVGNKTDLADKRQVSIEEGEAKAKEYDIMFTETSAKAGFNIKALFRKVASALPGIDSNS 174
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB6B_CAEEL (Ras-related protein Rab-6.2 OS=Caenorhabditis elegans GN=rab-6.2 PE=2 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 5.874e-68 Identity = 129/167 (77.25%), Postives = 143/167 (85.63%), Query Frame = 2 Query: 119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGM 619 L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR SF TSKWID+VRTERGSDVII+LVGNKTDL +KRQV+ +EGE K++ELNVMFIETSAKAG+N+K LFR+IA ALPG+ Sbjct: 8 LKKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGALPGI 174
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RYH1_SCHPO (GTP-binding protein ryh1 OS=Schizosaccharomyces pombe GN=ryh1 PE=1 SV=1) HSP 1 Score: 255.758 bits (652), Expect = 1.709e-67 Identity = 128/175 (73.14%), Postives = 145/175 (82.86%), Query Frame = 2 Query: 116 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQS 640 +L K+KLVFLG+QSVGKTS+ITRFMYD+FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR SF+NT KWI++VR ERG DVIIVLVGNKTDL +KRQV+ EEGE K++EL +M +ETSAKAG N+K LFRKIA LPGME + +QS Sbjct: 8 SLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGMENVETQS 182
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB6C_HUMAN (Ras-related protein Rab-6C OS=Homo sapiens GN=RAB6C PE=2 SV=2) HSP 1 Score: 239.965 bits (611), Expect = 9.705e-63 Identity = 120/176 (68.18%), Postives = 139/176 (78.98%), Query Frame = 2 Query: 119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKK 646 L K+KLVFLG+QSV KTS+ITRF YD FDNTYQA IGIDFLSKTMYLED T+ L+LWDTAGQER RSLIP YIR SF T+KWID+VRTERGSDVII LVGN+TDL +KRQVS+EEGE K++ LNV FIET AKAG+N+K LFR++AAALPGME+ S++ Sbjct: 11 LRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGMESTQDGSRE 186
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB41_HUMAN (Ras-related protein Rab-41 OS=Homo sapiens GN=RAB41 PE=2 SV=2) HSP 1 Score: 213.772 bits (543), Expect = 7.448e-55 Identity = 108/170 (63.53%), Postives = 128/170 (75.29%), Query Frame = 2 Query: 116 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMET 625 +L K KL+FLG+QSVGKTSII+RFMY+ F QAT+GIDFLSKTMYLED+ V+LQLWDTAGQERF SLIPSYIR SF T KW++ VR ERG DV+I+L+GNK DL KRQV+ E+GE KSR LNVMFIETSAK G+N+K LFR++A+AL T Sbjct: 28 SLCKSKLLFLGEQSVGKTSIISRFMYNSFGCACQATVGIDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVIMLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKLFRRVASALLSTRT 197
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: YPT6_YEAST (GTP-binding protein YPT6 OS=Saccharomyces cerevisiae GN=YPT6 PE=1 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 1.659e-54 Identity = 107/175 (61.14%), Postives = 135/175 (77.14%), Query Frame = 2 Query: 116 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKPLFRKIAAALPGMETLSS 634 +L KYK+VFLG+Q VGKTS+ITRFMYD FD+ YQATIGIDFLSKTMYL+D+T+RLQLWDTAGQERFRSLIPSYIR R+SF KWI++V+ ERG + VI+ +VGNK+DL ++RQ+S EEGE K++ L +F+ETS KAG+N+K LF+KIA +LP + S Sbjct: 7 SLTKYKIVFLGEQGVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDTAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDENVILCIVGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKALFKKIAKSLPEFQNSES 181
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB6A_RAT (Ras-related protein Rab-6A (Fragment) OS=Rattus norvegicus GN=Rab6a PE=2 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 5.729e-39 Identity = 81/118 (68.64%), Postives = 95/118 (80.51%), Query Frame = 2 Query: 293 TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKK 646 TAGQERFRSLIPSYIR SF T+KWID+VRTERGSDVII+LVGNKTDL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+ +S++ Sbjct: 1 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRE 118
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB5B_CHICK (Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 3.045e-32 Identity = 66/174 (37.93%), Postives = 105/174 (60.34%), Query Frame = 2 Query: 113 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSS 634 S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++WDTAGQER+ SL P Y R +++F W+ E++ + ++I L GNK DL KR V EE +A + + +++F+ETSAK N+ LF IA LP E S+ Sbjct: 16 SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQST 189
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.194e-32 Identity = 65/170 (38.24%), Postives = 103/170 (60.59%), Query Frame = 2 Query: 113 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 622 S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++WDTAGQER+ SL P Y R +++F W+ E++ + ++I L GNK DL KR V EE +A + + +++F+ETSAK N+ LF IA LP E Sbjct: 16 SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 185
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.194e-32 Identity = 65/170 (38.24%), Postives = 103/170 (60.59%), Query Frame = 2 Query: 113 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 622 S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++WDTAGQER+ SL P Y R +++F W+ E++ + ++I L GNK DL KR V EE +A + + +++F+ETSAK N+ LF IA LP E Sbjct: 16 SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 185 The following BLAST results are available for this feature:
BLAST of FC920882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920882 ID=FC920882; Name=FC920882; organism=Citrus clementina; type=EST; length=712bpback to top |