FC920882

Overview
NameFC920882
Unique NameFC920882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.943e-28
Identity = 61/160 (38.12%), Postives = 95/160 (59.38%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            KL+ +GD  VGK+ ++ RF  D+F  ++  TIGIDF  +T+ + ++ V+LQ+WDTAGQERFR++  +Y R              +SF N   W   V++     V ++LVGNK DL EKR VS E+G+A + +  + F+E S+K   N++  F  +A  +
Sbjct:   13 KLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRI 172          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 5.943e-28
Identity = 66/161 (40.99%), Postives = 94/161 (58.39%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            K++ LGD  VGKT  + +F    F   T+ AT+GIDF +K + ++   V+LQ+WDTAGQERFRS+  +Y R             + SF N   W+ E+      DV+I+L+GNK D+  +R +  E+GE  +RE  V F+ETSAK G N++  F  IA  L
Sbjct:   31 KVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKEL 191          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.943e-28
Identity = 64/167 (38.32%), Postives = 98/167 (58.68%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMET 625
            +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+WDTAGQERFRS+  +Y R             + SF N   W+ E++     DV+++L+GNK D  ++R V  E+GE  ++E  + F+ETSAK+G N+   F  IA  L    T
Sbjct:   65 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELKQRST 231          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.762e-28
Identity = 62/157 (39.49%), Postives = 97/157 (61.78%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQERFR++  +Y R              ++F N  +W   V      +  ++LVGNK+D+ + R V+ E+GEA ++EL + FIE+SAK   N+  +F  +A
Sbjct:   22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVGNKSDM-DTRVVTYEQGEALAKELGLPFIESSAKNDDNVNEIFFTLA 177          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.762e-28
Identity = 56/154 (36.36%), Postives = 97/154 (62.99%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 589
            +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+  SY R             R +F + + W+++ R    S+++I+L+GNK+DL  +R+V  EEGEA +RE  ++F+ETSAK   N++  F
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 160          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.762e-28
Identity = 56/154 (36.36%), Postives = 97/154 (62.99%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 589
            +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+  SY R             R +F + + W+++ R    S+++I+L+GNK+DL  +R+V  EEGEA +RE  ++F+ETSAK   N++  F
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 160          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.762e-28
Identity = 56/154 (36.36%), Postives = 97/154 (62.99%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 589
            +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+  SY R             R +F + + W+++ R    S+++I+L+GNK+DL  +R+V  EEGEA +RE  ++F+ETSAK   N++  F
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 160          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.762e-28
Identity = 56/154 (36.36%), Postives = 97/154 (62.99%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 589
            +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+  SY R             R +F + + W+++ R    S+++I+L+GNK+DL  +R+V  EEGEA +RE  ++F+ETSAK   N++  F
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 160          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.762e-28
Identity = 56/154 (36.36%), Postives = 97/154 (62.99%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 589
            +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+  SY R             R +F + + W+++ R    S+++I+L+GNK+DL  +R+V  EEGEA +RE  ++F+ETSAK   N++  F
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 160          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.762e-28
Identity = 56/154 (36.36%), Postives = 97/154 (62.99%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 589
            +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+  SY R             R +F + + W+++ R    S+++I+L+GNK+DL  +R+V  EEGEA +RE  ++F+ETSAK   N++  F
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 160          
The following BLAST results are available for this feature:
BLAST of FC920882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RYL1_YARLI5.943e-2838.13Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB37_HUMAN5.943e-2840.99Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
RAB26_RAT5.943e-2838.32Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
SEC4_CANGA7.762e-2839.49Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]
RAB2A_RABIT7.762e-2836.36Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB7.762e-2836.36Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE7.762e-2836.36Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA7.762e-2836.36Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN7.762e-2836.36Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK7.762e-2836.36Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionC32014C04EF RVDevelop1 Citrus clementina cDNA clone C32014C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920882 ID=FC920882; Name=FC920882; organism=Citrus clementina; type=EST; length=712bp
ACACTGAACAGAGTCCTGGCTTTACTAAAATTGCTTCAGCTTATTAAACA
AATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAAA
ATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAGA
TCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAAT
TCGATAACACCTATCAGGCTACAATTGGTATTGACTTCCTTTCAAAAACT
ATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTGG
ACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCTG
TTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACACT
TCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCAT
TGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCCA
TAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGAA
ACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTGC
TGCAGCATTGCCAGGGATGGAAACACTTTCTTCACAAAGCAAGAAGAAAT
GGTTGACGTGAATCTGAGGTCTACAACTGGCAATGCATCACAGTCCCAGT
CTCAGTCAAGTG
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