FC920882

Overview
NameFC920882
Unique NameFC920882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RB22A_MOUSE (Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27
Identity = 59/169 (34.91%), Postives = 93/169 (55.03%), Query Frame = 2
Query:  116 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 622
            AL + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WDTAGQERFR+L P Y R              ++F     W+ E+R      +++ + GNK DL + R+V   + +  +  ++ +F+ETSAK   NI  LF +I+  +P  +
Sbjct:    2 ALRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSTD 170          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27
Identity = 54/154 (35.06%), Postives = 100/154 (64.94%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 589
            +K+V +GD +VGK+ I+ RF  ++F    +ATIG++F ++T+ ++ ++V+ Q+WDTAGQER+R++  +Y R             RQ+F +  +W++E+R     +++I+L+GNKTDL ++R V  E+ +  +++  + F+ETSA    N++  F
Sbjct:   16 FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAF 169          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27
Identity = 55/157 (35.03%), Postives = 98/157 (62.42%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            +KLV +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++D+ V+ Q+WDTAGQER+R++  +Y R               +F N  +W+ E+R     +++I+LVGNK DL   R VS E+ +A +   N  F+ETSA    N++  F ++
Sbjct:   15 FKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEV 171          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB31_RAT (Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27
Identity = 58/169 (34.32%), Postives = 96/169 (56.80%), Query Frame = 2
Query:  116 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 622
            A+ + K+  LGD  VGK+SI+ RF+ D FD+    TIG  F++KT+   +   +  +WDTAGQERF SL P Y R             + SF    KW+ E++     ++++ + GNK DL + R+V +++ +  +  +  + +ETSAK   NI+ LF+ I+  +P ++
Sbjct:    2 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGALVVETSAKNAINIEELFQGISRQIPPLD 170          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27
Identity = 62/162 (38.27%), Postives = 95/162 (58.64%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+WDTAGQERFRS+  +Y R             + SF N   W+ E++     DV+++L+GNK D  + R V  E+GE  ++E  + F+ETSA+ G N+   F  IA  L
Sbjct:   68 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKEL 229          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RB22A_CANFA (Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.031e-27
Identity = 58/169 (34.32%), Postives = 94/169 (55.62%), Query Frame = 2
Query:  116 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 622
            AL + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WDTAGQE FR+L P Y R              ++F     W+ E+R     ++++ + GNK DL++ R+V   + +  +  ++ +F+ETSAK   NI  LF +I+  +P  +
Sbjct:    2 ALRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQEAFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSAD 170          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.031e-27
Identity = 57/161 (35.40%), Postives = 94/161 (58.39%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  ++ V+LQ+WDTAGQER+R++  +Y R              +SF     W  +++T    +  ++LVGNK D+ E+R V  E+G+  + +L   F E SAK   +++  F ++  A+
Sbjct:   23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 183          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.031e-27
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            K++ LGD  VGKT  + +F    F   T+ AT+GID  +K + ++   V+LQ+WDTAGQERFRS+  +Y R             + SF N   W+ E+      DV+I+L+GNK D+  +R +  E+GE  +RE  V F+ETSAK G N++  F  IA  L
Sbjct:   31 KVMLLGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKVVTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADVSSERVIRSEDGETLAREYGVPFMETSAKTGMNVELAFLAIAKEL 191          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.031e-27
Identity = 60/162 (37.04%), Postives = 98/162 (60.49%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            +K++ +GD   GK+S++ RF  + +  +Y +TIG+DF  KT+ +++ T++LQ+WDTAGQERFR++  +Y R             + SF + T  W+ ++     S+V  +L+GNK DL E R VS +E +  + + N+ +IE SAK   N++  F  IA AL
Sbjct:    8 FKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKAL 169          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 6.571e-27
Identity = 60/161 (37.27%), Postives = 94/161 (58.39%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERFR++  SY R             + SF N  +W+ E+      +V  +LVGNK DL  K+ V     +  +  L + F+ETSAK   N++  F  +AA +
Sbjct:   12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172          
The following BLAST results are available for this feature:
BLAST of FC920882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB22A_MOUSE3.852e-2734.91Ras-related protein Rab-22A OS=Mus musculus GN=Rab... [more]
RB11D_TOBAC3.852e-2735.06Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11B_TOBAC3.852e-2735.03Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAB31_RAT3.852e-2734.32Ras-related protein Rab-31 OS=Rattus norvegicus GN... [more]
RAB26_MOUSE3.852e-2738.27Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RB22A_CANFA5.031e-2734.32Ras-related protein Rab-22A OS=Canis familiaris GN... [more]
RAB3B_HUMAN5.031e-2735.40Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
RAB37_MOUSE5.031e-2740.37Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
RAB1_THEPA5.031e-2737.04Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RAB1A_PIG6.571e-2737.27Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]

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Properties
Property NameValue
Genbank descriptionC32014C04EF RVDevelop1 Citrus clementina cDNA clone C32014C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920882 ID=FC920882; Name=FC920882; organism=Citrus clementina; type=EST; length=712bp
ACACTGAACAGAGTCCTGGCTTTACTAAAATTGCTTCAGCTTATTAAACA
AATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAAA
ATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAGA
TCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAAT
TCGATAACACCTATCAGGCTACAATTGGTATTGACTTCCTTTCAAAAACT
ATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTGG
ACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCTG
TTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACACT
TCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCAT
TGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCCA
TAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGAA
ACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTGC
TGCAGCATTGCCAGGGATGGAAACACTTTCTTCACAAAGCAAGAAGAAAT
GGTTGACGTGAATCTGAGGTCTACAACTGGCAATGCATCACAGTCCCAGT
CTCAGTCAAGTG
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