FC920882

Overview
NameFC920882
Unique NameFC920882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB18_DICDI (Ras-related protein Rab-18 OS=Dictyostelium discoideum GN=rab18 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.571e-27
Identity = 70/178 (39.33%), Postives = 107/178 (60.11%), Query Frame = 2
Query:  125 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGM--ETLSSQSKKK 649
            +YK++ +GD  VGKTSI+ RF  D FD     TIG++F  K + ++ + V L +WDTAGQE+FR+LI SY R             R+SF N + W++EV      S+++ +LVGNK D  E R+V+ EEG   +++  ++FIE SAK+   I+  F ++A  +  +   T SSQ K++
Sbjct:    6 QYKVLLIGDSDVGKTSIVKRFSDDTFDEDLLCTIGVEFKMKEVKVDGKKVDLCIWDTAGQEKFRALISSYYRGAHGIILTYDVTKRESFDNLNYWLNEVENFANRSNLVKLLVGNKID-KENREVTREEGAEFAKKKAMLFIECSAKSKIGIQQAFEELAQKIIEIPQNTSSSQPKQR 182          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 120.553 bits (301), Expect = 8.581e-27
Identity = 54/157 (34.39%), Postives = 100/157 (63.69%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQER+R++  +Y R               ++ N  +W+ E+R    S+++I+LVGNK+DL   R V  +E  A + + N+ FIETSA    N++  F+ I
Sbjct:   12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 168          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 8.581e-27
Identity = 54/157 (34.39%), Postives = 100/157 (63.69%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQER+R++  +Y R               ++ N  +W+ E+R    S+++I+LVGNK+DL   R V  +E  A + + N+ FIETSA    N++  F+ I
Sbjct:   12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 168          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 120.553 bits (301), Expect = 8.581e-27
Identity = 54/157 (34.39%), Postives = 100/157 (63.69%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQER+R++  +Y R               ++ N  +W+ E+R    S+++I+LVGNK+DL   R V  +E  A + + N+ FIETSA    N++  F+ I
Sbjct:   12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 168          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 8.581e-27
Identity = 54/157 (34.39%), Postives = 100/157 (63.69%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQER+R++  +Y R               ++ N  +W+ E+R    S+++I+LVGNK+DL   R V  +E  A + + N+ FIETSA    N++  F+ I
Sbjct:   12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 168          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.581e-27
Identity = 57/161 (35.40%), Postives = 93/161 (57.76%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  ++ V+LQ+WDTAGQER+R++  +Y R              +SF     W  +++T    +  ++LVGNK D+ E+R V  E+G   + +L   F E SAK   +++  F ++  A+
Sbjct:   23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAI 183          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.581e-27
Identity = 57/161 (35.40%), Postives = 93/161 (57.76%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  ++ V+LQ+WDTAGQER+R++  +Y R              +SF     W  +++T    +  ++LVGNK D+ E+R V  E+G   + +L   F E SAK   +++  F ++  A+
Sbjct:   23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAI 183          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.581e-27
Identity = 57/161 (35.40%), Postives = 93/161 (57.76%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  ++ V+LQ+WDTAGQER+R++  +Y R              +SF     W  +++T    +  ++LVGNK D+ E+R V  E+G   + +L   F E SAK   +++  F ++  A+
Sbjct:   23 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAI 183          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB31_MOUSE (Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.581e-27
Identity = 58/166 (34.94%), Postives = 94/166 (56.63%), Query Frame = 2
Query:  116 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALP 613
            A+ + K+  LGD  VGK+SI+ RF+ D FD+    TIG  F++KT+   +   +  +WDTAGQERF SL P Y R             + SF    KW+ E++     ++++ + GNK DL + R+V +++ +  +  +  + +ETSAK   NI+ LF+ I+  +P
Sbjct:    2 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIP 167          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.581e-27
Identity = 58/165 (35.15%), Postives = 96/165 (58.18%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 622
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ + ++LQ+WDTAGQERFR++  SY R               SF N  +W+ E++      V  +LVGNK DL+EK+ V        +  + + F+ETSAK+  N++  F  +A+ +  ++
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKKLQ 173          
The following BLAST results are available for this feature:
BLAST of FC920882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB18_DICDI6.571e-2739.33Ras-related protein Rab-18 OS=Dictyostelium discoi... [more]
RB11B_RAT8.581e-2734.39Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE8.581e-2734.39Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN8.581e-2734.39Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_BOVIN8.581e-2734.39Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RAB3B_MOUSE8.581e-2735.40Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU8.581e-2735.40Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB3B_BOVIN8.581e-2735.40Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B ... [more]
RAB31_MOUSE8.581e-2734.94Ras-related protein Rab-31 OS=Mus musculus GN=Rab3... [more]
RAB1B_DICDI8.581e-2735.15Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionC32014C04EF RVDevelop1 Citrus clementina cDNA clone C32014C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920882 ID=FC920882; Name=FC920882; organism=Citrus clementina; type=EST; length=712bp
ACACTGAACAGAGTCCTGGCTTTACTAAAATTGCTTCAGCTTATTAAACA
AATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAAA
ATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAGA
TCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAAT
TCGATAACACCTATCAGGCTACAATTGGTATTGACTTCCTTTCAAAAACT
ATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTGG
ACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCTG
TTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACACT
TCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCAT
TGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCCA
TAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGAA
ACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTGC
TGCAGCATTGCCAGGGATGGAAACACTTTCTTCACAAAGCAAGAAGAAAT
GGTTGACGTGAATCTGAGGTCTACAACTGGCAATGCATCACAGTCCCAGT
CTCAGTCAAGTG
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