FC920882

Overview
NameFC920882
Unique NameFC920882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RB33B_HUMAN (Ras-related protein Rab-33B OS=Homo sapiens GN=RAB33B PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.916e-18
Identity = 51/147 (34.69%), Postives = 81/147 (55.10%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 562
            +K++ +GD +VGKT +  RF   +F +  +ATIG+DF  + + ++   +++QLWDTAGQERFR S++  Y R               SF +   WI+E +     +D+  +LVGNK DL    QV  +  +  +   ++   ETSAK
Sbjct:   34 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK 180          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RB33B_MOUSE (Ras-related protein Rab-33B OS=Mus musculus GN=Rab33b PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.269e-18
Identity = 51/147 (34.69%), Postives = 81/147 (55.10%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 562
            +K++ +GD +VGKT +  RF   +F +  +ATIG+DF  + + ++   +++QLWDTAGQERFR S++  Y R               SF +   WI+E +     +D+  +LVGNK DL    QV  +  +  +   ++   ETSAK
Sbjct:   34 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK 180          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RASU_DICDI (Ras-like protein rasU OS=Dictyostelium discoideum GN=rasU PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.269e-18
Identity = 51/157 (32.48%), Postives = 84/157 (53.50%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            +L  +GD  VGKTSI  +F+ + F N Y  TI  D   K   ++D+   L + DTAGQ+   ++   +I+             R SF     ++D+++  +   V I+++ NK+DL ++RQV+ +EGE  +    + F+E SAK   NI  +F +IA
Sbjct:   16 RLCVMGDGGVGKTSITIQFISNHFVNCYDPTIE-DLYRKQCLIDDQVYMLDILDTAGQDELNAIRNHWIKSCEGFILVYSVTSRSSFDQIQSFLDQIKFLKSEKVPIIMIANKSDLDDERQVTYQEGENFANRFGMSFMEVSAKYKLNIDEVFNQIA 171          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RB33B_CHICK (Ras-related protein Rab-33B OS=Gallus gallus GN=RAB33B PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.575e-18
Identity = 51/147 (34.69%), Postives = 80/147 (54.42%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 562
            +K++ +GD +VGKT +  RF   +F    +ATIG+DF  + + ++   +++QLWDTAGQERFR S++  Y R               SF +   WI+E +     +D+  +LVGNK DL    QV  +  +  +   ++   ETSAK
Sbjct:   32 FKIIVIGDSNVGKTCLTYRFCAGRFPQRTEATIGVDFRERAVTIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNLASFHSLPSWIEECKQHLLTNDIPRILVGNKCDLRNAIQVPTDLAQKFADTHSMPLFETSAK 178          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB38_MOUSE (Ras-related protein Rab-38 OS=Mus musculus GN=Rab38 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.281e-18
Identity = 58/159 (36.48%), Postives = 85/159 (53.46%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE----RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN----VMFIETSAKAGFNI 577
            YKL+ +GD  VGKTSII R+++  F + Y+ATIG+DF  K ++ +  T VRLQLWD AGQERF ++   Y R               +F   +KW +++ ++     G  V +VL+ NK D  + + V +  G    +       V + ETSAK   NI
Sbjct:   10 YKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPVSVVLLANKCD--QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINI 166          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB38_HUMAN (Ras-related protein Rab-38 OS=Homo sapiens GN=RAB38 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.281e-18
Identity = 58/159 (36.48%), Postives = 85/159 (53.46%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE----RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN----VMFIETSAKAGFNI 577
            YKL+ +GD  VGKTSII R+++  F + Y+ATIG+DF  K ++ +  T VRLQLWD AGQERF ++   Y R               +F   +KW +++ ++     G  V +VL+ NK D  + + V +  G    +       V + ETSAK   NI
Sbjct:   10 YKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLANKCD--QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINI 166          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RALA_DROME (Ras-related protein Ral-a OS=Drosophila melanogaster GN=Rala PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.622e-17
Identity = 51/179 (28.49%), Postives = 97/179 (54.19%), Query Frame = 2
Query:  107 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQS 640
            P +  A +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + DTAGQE + ++  +Y R              +SF  T ++ +++ R +    +  +LVGNK DL +KR+V + E + ++++  V ++ETSAK   N+  +F  +   +   +T  S++
Sbjct:    5 PTAGPALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQATQEFREQILRVKNDESIPFLLVGNKCDLNDKRKVPLSECQLRAQQWAVPYVETSAKTRENVDKVFFDLMREIRSRKTEDSKA 182          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB24_DICDI (Ras-related protein Rab-24 OS=Dictyostelium discoideum GN=rab24 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.622e-17
Identity = 56/160 (35.00%), Postives = 89/160 (55.62%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK---RQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            K+V LG  SVGKT I+TR+   +F +T+  TIG  F SK + + +  V L +WDTAG ER++++  SY R             R+S+   + W +E+ T+   ++ I +VG K DL+++   + V  EE +  +R       ETS++ G N+  LF+ IA
Sbjct:    9 KVVLLGYASVGKTCIVTRYTSGQFGDTH-TTIGGAFSSKRVVVGETEVLLGIWDTAGTERYQAVNVSYYRRANAAIVCYDLTNRESWEKVTFWAEEL-TQNEPEIEIYIVGTKLDLIQQGDIKAVPEEEVKQTARRYKAHIFETSSRTGENVSLLFQTIA 166          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAP2A_PONAB (Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2A PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.119e-17
Identity = 56/161 (34.78%), Postives = 86/161 (53.42%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            + +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTAG E+F S+   YI+             +QSF +     D++ R +R   V ++LVGNK DL  +R+VS  EG A + E    F+ETSAK+   +  LF +I
Sbjct:    1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAP2A_MOUSE (Ras-related protein Rap-2a OS=Mus musculus GN=Rap2a PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.119e-17
Identity = 56/161 (34.78%), Postives = 86/161 (53.42%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            + +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTAG E+F S+   YI+             +QSF +     D++ R +R   V ++LVGNK DL  +R+VS  EG A + E    F+ETSAK+   +  LF +I
Sbjct:    1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160          
The following BLAST results are available for this feature:
BLAST of FC920882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB33B_HUMAN1.916e-1834.69Ras-related protein Rab-33B OS=Homo sapiens GN=RAB... [more]
RB33B_MOUSE3.269e-1834.69Ras-related protein Rab-33B OS=Mus musculus GN=Rab... [more]
RASU_DICDI4.269e-1832.48Ras-like protein rasU OS=Dictyostelium discoideum ... [more]
RB33B_CHICK5.575e-1834.69Ras-related protein Rab-33B OS=Gallus gallus GN=RA... [more]
RAB38_MOUSE7.281e-1836.48Ras-related protein Rab-38 OS=Mus musculus GN=Rab3... [more]
RAB38_HUMAN7.281e-1836.48Ras-related protein Rab-38 OS=Homo sapiens GN=RAB3... [more]
RALA_DROME1.622e-1728.49Ras-related protein Ral-a OS=Drosophila melanogast... [more]
RAB24_DICDI1.622e-1735.00Ras-related protein Rab-24 OS=Dictyostelium discoi... [more]
RAP2A_PONAB2.119e-1734.78Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2... [more]
RAP2A_MOUSE2.119e-1734.78Ras-related protein Rap-2a OS=Mus musculus GN=Rap2... [more]

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Properties
Property NameValue
Genbank descriptionC32014C04EF RVDevelop1 Citrus clementina cDNA clone C32014C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920882 ID=FC920882; Name=FC920882; organism=Citrus clementina; type=EST; length=712bp
ACACTGAACAGAGTCCTGGCTTTACTAAAATTGCTTCAGCTTATTAAACA
AATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAAA
ATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAGA
TCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAAT
TCGATAACACCTATCAGGCTACAATTGGTATTGACTTCCTTTCAAAAACT
ATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTGG
ACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCTG
TTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACACT
TCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCAT
TGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCCA
TAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGAA
ACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTGC
TGCAGCATTGCCAGGGATGGAAACACTTTCTTCACAAAGCAAGAAGAAAT
GGTTGACGTGAATCTGAGGTCTACAACTGGCAATGCATCACAGTCCCAGT
CTCAGTCAAGTG
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