FC920882

Overview
NameFC920882
Unique NameFC920882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: VPS21_YEAST (Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae GN=VPS21 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.862e-30
Identity = 68/179 (37.99%), Postives = 106/179 (59.22%), Query Frame = 2
Query:  113 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE---KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQS 640
            +++   KLV LG+ +VGK+SI+ RF+ + F    + TIG  FL++ + + + TV+ ++WDTAGQERF SL P Y R              QSF+    W+ E+  +   D+II LVGNK D+++   +R+V+ EEGE  + E  ++F ETSAK G N+  +F  I   +P ++T   Q+
Sbjct:    3 TSVTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP-LKTAEEQN 180          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.862e-30
Identity = 64/158 (40.51%), Postives = 98/158 (62.03%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y R              +SF N   WI  +     +DV  +++GNK D+ +KRQVS E GE  + +  + F+ETSAKA  N++  F  +A
Sbjct:    9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.862e-30
Identity = 64/158 (40.51%), Postives = 98/158 (62.03%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y R              +SF N   WI  +     +DV  +++GNK D+ +KRQVS E GE  + +  + F+ETSAKA  N++  F  +A
Sbjct:    9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.862e-30
Identity = 64/158 (40.51%), Postives = 98/158 (62.03%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y R              +SF N   WI  +     +DV  +++GNK D+ +KRQVS E GE  + +  + F+ETSAKA  N++  F  +A
Sbjct:    9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.862e-30
Identity = 64/158 (40.51%), Postives = 98/158 (62.03%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y R              +SF N   WI  +     +DV  +++GNK D+ +KRQVS E GE  + +  + F+ETSAKA  N++  F  +A
Sbjct:    9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.862e-30
Identity = 64/158 (40.51%), Postives = 98/158 (62.03%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y R              +SF N   WI  +     +DV  +++GNK D+ +KRQVS E GE  + +  + F+ETSAKA  N++  F  +A
Sbjct:    9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.862e-30
Identity = 64/158 (40.51%), Postives = 98/158 (62.03%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y R              +SF N   WI  +     +DV  +++GNK D+ +KRQVS E GE  + +  + F+ETSAKA  N++  F  +A
Sbjct:    9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.862e-30
Identity = 64/162 (39.51%), Postives = 101/162 (62.35%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIKPLFRKIAAAL 610
            +KLV +GD SVGKT ++ RF    F     +TIG+DF  KT+ ++ + V+LQ+WDTAGQERFR++  SY R             R +FL+   WI++VR   GS+++ +L+GNK+DL + R+V + E ++ +   +++  IETSAK   N++  F ++A  L
Sbjct:   17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADLREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATEL 178          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.349e-30
Identity = 64/158 (40.51%), Postives = 97/158 (61.39%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y R              +SF N   WI  +     SDV  +++GNK D+ +KRQVS E GE  + +  + F+ETSAK+  N++  F  +A
Sbjct:    9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLA 166          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.349e-30
Identity = 64/158 (40.51%), Postives = 97/158 (61.39%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y R              +SF N   WI  +     SDV  +++GNK D+ +KRQVS E GE  + +  + F+ETSAK+  N++  F  +A
Sbjct:    9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLA 166          
The following BLAST results are available for this feature:
BLAST of FC920882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
VPS21_YEAST4.862e-3037.99Vacuolar protein sorting-associated protein 21 OS=... [more]
RAB8A_RAT4.862e-3040.51Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_PONAB4.862e-3040.51Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB8A_MOUSE4.862e-3040.51Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_MACFA4.862e-3040.51Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN4.862e-3040.51Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA4.862e-3040.51Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB43_RAT4.862e-3039.51Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]
RAB8B_RAT6.349e-3040.51Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB6.349e-3040.51Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]

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Properties
Property NameValue
Genbank descriptionC32014C04EF RVDevelop1 Citrus clementina cDNA clone C32014C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920882 ID=FC920882; Name=FC920882; organism=Citrus clementina; type=EST; length=712bp
ACACTGAACAGAGTCCTGGCTTTACTAAAATTGCTTCAGCTTATTAAACA
AATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAAA
ATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAGA
TCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAAT
TCGATAACACCTATCAGGCTACAATTGGTATTGACTTCCTTTCAAAAACT
ATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTGG
ACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCTG
TTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACACT
TCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCAT
TGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCCA
TAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGAA
ACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTGC
TGCAGCATTGCCAGGGATGGAAACACTTTCTTCACAAAGCAAGAAGAAAT
GGTTGACGTGAATCTGAGGTCTACAACTGGCAATGCATCACAGTCCCAGT
CTCAGTCAAGTG
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