FC920882

Overview
NameFC920882
Unique NameFC920882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAS3_RHIRA (Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 55/174 (31.61%), Postives = 85/174 (48.85%), Query Frame = 2
Query:  101 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGM 619
            M+  S L +YK+V +G   VGK+++  +F+   F + Y  TI  D   K   ++D T  L + DTAGQE + ++   Y+R             R SF   + +  ++R  +  D   +VLVGNK DL   RQVS +EG   ++     F ETSAK    +   F ++   +  M
Sbjct:    1 MSKASFLREYKIVIVGGGGVGKSALTIQFIQSHFVDEYDPTIE-DSYRKQCVIDDETALLDVLDTAGQEEYSAMREQYMRNGEGFVLVYSITSRLSFEEVNTFYQQIRRVKDRDSFPMVLVGNKCDLEGDRQVSSQEGRDLAKSFGCPFSETSAKQRIRVDDTFYEVVREIRRM 173          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB7L_RAT (Ras-related protein Rab-7L1 OS=Rattus norvegicus GN=Rab7l1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 55/161 (34.16%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE----RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIKPLFR 592
            +K++ +GD +VGKTS++ R+  D F   Y++T+G+DF  K +   D   VRLQLWD AGQERF S+   Y R               +F N+ +W  ++ ++     G  V  +L+ NK+DL     VS ++ +  S+E     + ETS K   NI    R
Sbjct:    8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLANKSDL-SPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMR 167          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB7L_MOUSE (Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab7l1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 55/161 (34.16%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE----RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIKPLFR 592
            +K++ +GD +VGKTS++ R+  D F   Y++T+G+DF  K +   D   VRLQLWD AGQERF S+   Y R               +F N+ +W  ++ ++     G  V  +L+ NK+DL     VS ++ +  S+E     + ETS K   NI    R
Sbjct:    8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLANKSDL-SPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMR 167          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAS_EMENI (Ras-like protein OS=Emericella nidulans GN=AN0182 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.793e-16
Identity = 53/158 (33.54%), Postives = 82/158 (51.90%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 589
            L +YKLV +G   VGK+ +  + +   F + Y  TI  D   K   ++D    L + DTAGQE + ++   Y+R             RQSF     +  ++   +  D   I++VGNK DL ++R VS +EGE+ +R+    FIETSAK+  N++  F
Sbjct:    6 LREYKLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTIE-DSYRKQCVIDDEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKDYFPIIVVGNKCDLDKERVVSEQEGESLARQFGCKFIETSAKSRINVENAF 162          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAS2_HYDMA (Ras-like protein RAS2 OS=Hydra magnipapillata GN=RAS2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.793e-16
Identity = 53/176 (30.11%), Postives = 87/176 (49.43%), Query Frame = 2
Query:  125 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKKK 649
            +YKLV +G   VGK+++  +F+   F   Y  TI  D   K   ++D+   L + DTAGQE F ++   Y+R             R SF    ++  ++ R +   +  ++LVGNK+DL  +R VS  E +   R+L V ++E+SAK   N+   F  +  A+      S +  +K
Sbjct:    8 QYKLVVVGGGGVGKSALTIQFIQSHFVQDYDPTIE-DSYRKQCVIDDKVAHLDILDTAGQEEFSAMRDEYMRTGEGFLLVFSVTDRSSFDEIPRFHTQILRVKDIEEFPMILVGNKSDLENERTVSTAEAQELGRKLKVSYLESSAKQRINVDAAFHDLVRAIRNANKASVEPLRK 182          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RABY_DICDI (Ras-related protein RabY OS=Dictyostelium discoideum GN=rabY PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.793e-16
Identity = 45/157 (28.66%), Postives = 84/157 (53.50%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---SLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 589
            +K+V +GD+  GKT ++ RF+ + +   Y+ T  + F  KT+Y++ + ++LQ+WD+   E FR   + + +Y R               SF N   WI +++     + I ++V NK+DLV ++ +  +  ++    L + FIETS+K   N++  F
Sbjct:   12 FKIVIIGDRKTGKTCLMNRFVENTWSEEYRQTNLLHFKVKTIYIDCKIIKLQIWDSQADENFRFNNNNLSNY-RSASGFLVVYDCTNENSFSNLKHWIKDIKLYGRPNAINIVVSNKSDLVNEKVIDSDVAKSYCDSLEIPFIETSSKHSSNVEDCF 167          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB7L_PONAB (Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB7L1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.793e-16
Identity = 55/161 (34.16%), Postives = 83/161 (51.55%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE----RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIKPLFR 592
            +K++ +GD +VGKTS++ R+  D F   Y++T+G+DF  K +   D   VRLQLWD AGQERF S+   Y R               +F N+ +W  ++ ++     G  V  +L+ NK DL     VS ++ +  S+E     + ETS K   NI    R
Sbjct:    8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANKCDL-SPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMR 167          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB7L_HUMAN (Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB7L1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.793e-16
Identity = 55/161 (34.16%), Postives = 83/161 (51.55%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE----RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIKPLFR 592
            +K++ +GD +VGKTS++ R+  D F   Y++T+G+DF  K +   D   VRLQLWD AGQERF S+   Y R               +F N+ +W  ++ ++     G  V  +L+ NK DL     VS ++ +  S+E     + ETS K   NI    R
Sbjct:    8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANKCDL-SPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMR 167          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB32_HUMAN (Ras-related protein Rab-32 OS=Homo sapiens GN=RAB32 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.793e-16
Identity = 58/169 (34.32%), Postives = 84/169 (49.70%), Query Frame = 2
Query:  104 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIKPLFR 592
            AP +    +K++ +G+  VGKTSII R+++  F   Y+ATIG+DF  K +  + RT VRLQLWD AGQERF ++   Y +               +F    KW  +    V    GS +  VL+ NK D  +    S  + +   +E     + ETSAK   NI+   R
Sbjct:   18 APETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAAR 186          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RIT2_HUMAN (GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.342e-16
Identity = 57/176 (32.39%), Postives = 92/176 (52.27%), Query Frame = 2
Query:  125 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKKK 649
            +YK+V LG   VGK+++  +F+  +F + +  TI  D     + +++    L + DTAGQ  F ++   Y+R             RQSF   +K+ + +   R + ++ +VLVGNK DL + RQVS EEG + ++E N  F ETSA   F I   F  +   +   E++ S  +KK
Sbjct:   20 EYKVVMLGAGGVGKSAMTMQFISHQFPDYHDPTIE-DAYKTQVRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDLEQFRQVSTEEGLSLAQEYNCGFFETSAALRFCIDDAFHGLVREIRKKESMPSLMEKK 194          
The following BLAST results are available for this feature:
BLAST of FC920882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS3_RHIRA1.373e-1631.61Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3... [more]
RAB7L_RAT1.373e-1634.16Ras-related protein Rab-7L1 OS=Rattus norvegicus G... [more]
RAB7L_MOUSE1.373e-1634.16Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab... [more]
RAS_EMENI1.793e-1633.54Ras-like protein OS=Emericella nidulans GN=AN0182 ... [more]
RAS2_HYDMA1.793e-1630.11Ras-like protein RAS2 OS=Hydra magnipapillata GN=R... [more]
RABY_DICDI1.793e-1628.66Ras-related protein RabY OS=Dictyostelium discoide... [more]
RAB7L_PONAB1.793e-1634.16Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB... [more]
RAB7L_HUMAN1.793e-1634.16Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB... [more]
RAB32_HUMAN1.793e-1634.32Ras-related protein Rab-32 OS=Homo sapiens GN=RAB3... [more]
RIT2_HUMAN2.342e-1632.39GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 P... [more]

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Properties
Property NameValue
Genbank descriptionC32014C04EF RVDevelop1 Citrus clementina cDNA clone C32014C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920882 ID=FC920882; Name=FC920882; organism=Citrus clementina; type=EST; length=712bp
ACACTGAACAGAGTCCTGGCTTTACTAAAATTGCTTCAGCTTATTAAACA
AATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAAA
ATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAGA
TCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAAT
TCGATAACACCTATCAGGCTACAATTGGTATTGACTTCCTTTCAAAAACT
ATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTGG
ACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCTG
TTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACACT
TCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCAT
TGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCCA
TAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGAA
ACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTGC
TGCAGCATTGCCAGGGATGGAAACACTTTCTTCACAAAGCAAGAAGAAAT
GGTTGACGTGAATCTGAGGTCTACAACTGGCAATGCATCACAGTCCCAGT
CTCAGTCAAGTG
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