FC920882

Overview
NameFC920882
Unique NameFC920882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RB32A_DICDI (Ras-related protein Rab-32A OS=Dictyostelium discoideum GN=rab32A PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.342e-16
Identity = 57/163 (34.97%), Postives = 86/163 (52.76%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV--RTERGSD---VIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAGFNIKPLFR 592
            YK++ +GD   GKTSII RF+++ F   Y++TIG+DF  K +  + +T VRLQLWD AGQERF S+   Y +               +F   +KW  ++  +   G+D   + +VL+ NK DL +   +       K  + N  + + ETSAK   NI+   R
Sbjct:   16 YKILVVGDIGTGKTSIIKRFVHNIFSMHYKSTIGVDFALKVINWDPKTEVRLQLWDIAGQERFGSMTRVYYKEAVGAMITFDVTRMSTFEAVAKWKADIDSKVTYGADEKPIPVVLLANKCDLGKDAFIKTANDMDKYCKDNGFIGWFETSAKENMNIEKAAR 178          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RABM_DICDI (Ras-related protein RabM OS=Dictyostelium discoideum GN=rabM PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.342e-16
Identity = 55/157 (35.03%), Postives = 76/157 (48.41%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-KRQVSIEEGEAKSREL-------NVMFIETSAKAGFNI 577
            K++ LGD  VGKTS+   F+  K++   + T+   F SKT+ +E+  V L +WDT  QERF  L P Y R              +SF N  KW+DE R      V  VL+G K D+    + +S E  E   + +        V + ETSAK   NI
Sbjct:    7 KIITLGDSYVGKTSVFNNFVTGKYEIN-ECTVSPSFYSKTLTIENEPVILNVWDTCSQERFNGLSPIYYRWSNCYTLCFDIHNEKSFKNLDKWMDEARKFCIGKVPFVLIGTKKDIPRTDKSISKERIEQWCKNIEDQGIIDRVHYFETSAKFSQNI 162          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RASY_DICDI (Ras-like protein rasY OS=Dictyostelium discoideum GN=rasY PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.059e-16
Identity = 51/156 (32.69%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRK 595
            KL  +GD  VGKTS+  +F+ + F + Y  TI  D   K   ++D+   L + DTAGQ+   ++   +IR             R SF     + +++ R     DV I+++GNK+DL ++RQV+ +EG+  +R L + F+E SAK   N++ +F +
Sbjct:   12 KLCIMGDGGVGKTSVTIQFISNHFVHYYDPTIE-DSYRKQCLIDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFILVYSVTSRSSFDQVQFFREQIIRVLDRDDVPIMMIGNKSDLDDERQVTFQEGKDLARCLGMSFMEVSAKTRLNVEEVFNE 166          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RASX_DICDI (Ras-like protein rasX OS=Dictyostelium discoideum GN=rasX PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.059e-16
Identity = 53/174 (30.46%), Postives = 91/174 (52.30%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKKK 649
            KL  +GD  VGKT++  +F+ + F + Y  TI  D   K   ++D+   L + DTAGQ+   ++   +IR             R SF   + + +++ R     DV I+++GNK+DL ++RQV+ +EG+  +R   + F+E SAK   NI+ +F +    +     L ++ K K
Sbjct:   11 KLCIMGDGGVGKTAVTIQFISNHFVHYYDPTIE-DSYRKQCVIDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFVLVYSVTSRSSFDQIAFFKEQINRVLDSDDVPIMMIGNKSDLDDERQVTYQEGKDLARCFGMSFMEVSAKTRSNIEEVFNETVRCVKRKYDLHNKDKSK 183          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: DJC27_DANRE (DnaJ homolog subfamily C member 27 OS=Danio rerio GN=dnajc27 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.059e-16
Identity = 49/170 (28.82%), Postives = 85/170 (50.00%), Query Frame = 2
Query:  125 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-----DVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGM 619
            + K++ LG+  VGK+ II R+   +F   Y ATIGID+    + + DR +++ ++D AG   F  +   + +             R+SF     W+ E++ E GS     ++I V+  NK DL ++R V   EG   +      + ETSA++G  I  +F+   +++  M
Sbjct:   16 RVKVISLGNAEVGKSCIIKRYCEKRFVPKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDSQGVILVYDVGLRESFDALDSWLTEMKQEMGSQANMENIIFVVCANKVDLTKRRVVDESEGRLWAESRGFHYFETSAQSGEGINEMFQSFFSSITDM 185          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB32_MOUSE (Ras-related protein Rab-32 OS=Mus musculus GN=Rab32 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 56/164 (34.15%), Postives = 83/164 (50.61%), Query Frame = 2
Query:  104 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNI 577
            AP +    +K++ +G+  VGKTSII R+++  F   Y+ATIG+DF  K +  + RT VRLQLWD AGQERF ++   Y +               +F    KW ++    V    GS +  VL+ NK D  +    S  + +   ++     + ETSAK   NI
Sbjct:   16 APETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDSKVHLPNGSPIPAVLLANKCDQKKDNSQSPSQMDQFCKDHGFTGWFETSAKDNINI 179          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 54/177 (30.51%), Postives = 88/177 (49.72%), Query Frame = 2
Query:  113 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD----LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLS 631
            + +A++KLV +GD  VGKT+ +TR    +F+  Y AT G++  +  +Y     +R  +WDTAGQE+   L   Y               R ++ N  KW  ++ T    ++ IVLVGNK D     V+ RQ++        R+ ++ + + SAK+ +  +  F  I   L G  TL+
Sbjct:    7 NVVAEFKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMVLYTTKGPIRFNIWDTAGQEKLGGLREGYYIGANAAIMMFDVTSRITYKNIPKWHKDL-TRICENIPIVLVGNKVDSKDRKVKARQITFH------RKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPTLN 176          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RABL_MIMIV (Probable Rab-related GTPase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R214 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 49/160 (30.63%), Postives = 86/160 (53.75%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS--RELNVMFIETSAKAGFNIKPLFRKI 598
            YK++ +G   VGK+SI+ +F++++  +    TIG  F SK +  ++ +T++L +WDTAGQERFRS+   Y               R+SF +   WI+++R    +   I++V NK D ++K    + E E K   R+ +  ++  S+     +  LF K+
Sbjct:   14 YKIILIGSSGVGKSSIVHQFLFNRKISNVSPTIGAAFASKQVIAKNGKTLKLNIWDTAGQERFRSITKMYYTNSLGCLVVFDVTDRESFDDVYYWINDLRINCHTTYYILVVANKID-IDKNNWRVSENEIKKFCRDNDCDYVFASSFESDTVNNLFGKM 172          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAS2_YEAST (Ras-like protein 2 OS=Saccharomyces cerevisiae GN=RAS2 PE=1 SV=4)

HSP 1 Score: 84.3445 bits (207), Expect = 6.815e-16
Identity = 49/164 (29.88%), Postives = 86/164 (52.44%), Query Frame = 2
Query:  113 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            S + +YKLV +G   VGK+++  +     F + Y  TI  D   K + ++D    L + DTAGQE + ++   Y+R             + S      +  ++   + +D + IV+VGNK+DL  ++QVS ++G   ++++N  F+ETSAK   N++  F  +A
Sbjct:    6 SNIREYKLVVVGGGGVGKSALTIQLTQSHFVDEYDPTIE-DSYRKQVVIDDEVSILDILDTAGQEEYSAMREQYMRNGEGFLLVYSITSKSSLDELMTYYQQILRVKDTDYVPIVVVGNKSDLENEKQVSYQDGLNMAKQMNAPFLETSAKQAINVEEAFYTLA 168          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAS_LENED (Ras-like protein OS=Lentinula edodes PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.901e-16
Identity = 51/161 (31.68%), Postives = 79/161 (49.07%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            L +YKLV +G   VGK+++  +F+   F + Y  TI  D   K   ++D    L + DTAGQE + ++   Y+R             R SF   S +  ++   +  D   +V+V NK DL  +RQV + EG   +R     F+ETSAK   N+   F+ +
Sbjct:    8 LREYKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIE-DSYRKQCVIDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISTFHQQILRVKDQDTFPVVVVANKCDLEYERQVGMNEGRDLARHFGCKFVETSAKVRINVDQAFQDL 167          
The following BLAST results are available for this feature:
BLAST of FC920882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB32A_DICDI2.342e-1634.97Ras-related protein Rab-32A OS=Dictyostelium disco... [more]
RABM_DICDI2.342e-1635.03Ras-related protein RabM OS=Dictyostelium discoide... [more]
RASY_DICDI3.059e-1632.69Ras-like protein rasY OS=Dictyostelium discoideum ... [more]
RASX_DICDI3.059e-1630.46Ras-like protein rasX OS=Dictyostelium discoideum ... [more]
DJC27_DANRE3.059e-1628.82DnaJ homolog subfamily C member 27 OS=Danio rerio ... [more]
RAB32_MOUSE3.995e-1634.15Ras-related protein Rab-32 OS=Mus musculus GN=Rab3... [more]
RAN_TETTH5.218e-1630.51GTP-binding nuclear protein Ran OS=Tetrahymena the... [more]
RABL_MIMIV5.218e-1630.63Probable Rab-related GTPase OS=Acanthamoeba polyph... [more]
RAS2_YEAST6.815e-1629.88Ras-like protein 2 OS=Saccharomyces cerevisiae GN=... [more]
RAS_LENED8.901e-1631.68Ras-like protein OS=Lentinula edodes PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32014C04EF RVDevelop1 Citrus clementina cDNA clone C32014C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920882 ID=FC920882; Name=FC920882; organism=Citrus clementina; type=EST; length=712bp
ACACTGAACAGAGTCCTGGCTTTACTAAAATTGCTTCAGCTTATTAAACA
AATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAAA
ATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAGA
TCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAAT
TCGATAACACCTATCAGGCTACAATTGGTATTGACTTCCTTTCAAAAACT
ATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTGG
ACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCTG
TTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACACT
TCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCAT
TGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCCA
TAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGAA
ACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTGC
TGCAGCATTGCCAGGGATGGAAACACTTTCTTCACAAAGCAAGAAGAAAT
GGTTGACGTGAATCTGAGGTCTACAACTGGCAATGCATCACAGTCCCAGT
CTCAGTCAAGTG
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