FC920882

Overview
NameFC920882
Unique NameFC920882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RASV_DICDI (Ras-like protein rasV OS=Dictyostelium discoideum GN=rasV PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.163e-15
Identity = 52/167 (31.14%), Postives = 87/167 (52.10%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETL 628
            +L  +GD  VGKT++ T+F+ + F   Y  TI  D   K + + D++  L + DTAGQ+   ++   +IR             + SF     + +++ R     DV I+++GNK+DLV +RQV+  EG+  ++ L + F+E SAK   NI  +F +    +   E L
Sbjct:   35 QLCIMGDGGVGKTAVTTQFISNHFVYYYDPTIE-DSYRKQICVSDKSYILDILDTAGQDELTAMRDQWIRSCEGFVLVYSITCKSSFNQVLNFREQIIRVLDRDDVPIMMIGNKSDLVNERQVTYHEGKELAQRLGMSFMEVSAKNRSNIDEVFHEAVCCVKRKEEL 200          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RASL_COLTR (Ras-like protein OS=Colletotrichum trifolii GN=RAS PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.163e-15
Identity = 52/161 (32.30%), Postives = 82/161 (50.93%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            L +YKLV +G   VGK+ +  + +   F + Y  TI  D   K   +++    L + DTAGQE + ++   Y+R             RQSF   + +  ++   +  D   +V+VGNK DL  +R+V+ +EGEA ++     FIETSAK+  N+   F  I
Sbjct:    6 LREYKLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTIE-DSYRKQCVIDEEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEITTFQQQILRVKDKDYFPMVVVGNKCDLEGEREVTRQEGEALAKSFGCKFIETSAKSRINVDKAFYDI 165          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAS2_DROME (Ras-like protein 2 OS=Drosophila melanogaster GN=Ras64B PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.163e-15
Identity = 52/158 (32.91%), Postives = 82/158 (51.90%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            YKLV +G   VGK++I  +F+   F   Y  TI  D  +K   ++D   +L + DTAGQE F ++   Y+R               SF    K+  ++ R +   +  +++VGNK DL  ++QVS+EE +  SR L + +IE SAK   N+   F ++
Sbjct:    6 YKLVVVGGGGVGKSAITIQFIQSYFVTDYDPTIE-DSYTKQCNIDDVPAKLDILDTAGQEEFSAMREQYMRSGEGFLLVFALNDHSSFDEIPKFQRQILRVKDRDEFPMLMVGNKCDLKHQQQVSLEEAQNTSRNLMIPYIECSAKLRVNVDQAFHEL 162          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAS1_RHIRA (Ras-like protein 1 OS=Rhizomucor racemosus GN=RAS1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.163e-15
Identity = 53/163 (32.52%), Postives = 81/163 (49.69%), Query Frame = 2
Query:  113 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            S + +YKLV +G   VGK+++  +F+   F + Y  TI  D   K   ++  T  L + DTAGQE + ++   Y+R             R SF   + +  ++   +  D   +VLVGNK DL   RQVS +EG   ++     FIETSAK   N+   F ++
Sbjct:    6 SFVREYKLVMVGGGGVGKSALTIQFIQSHFVDEYDPTIE-DSYRKQCVIDSETALLDVLDTAGQEEYSAMREQYMRNGEGFLLVYSITSRLSFEEITTFYQQICRVKDRDYFPMVLVGNKCDLEGDRQVSSQEGRDLAKNFGCQFIETSAKQRINVDEAFFEV 167          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB32_PIG (Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.518e-15
Identity = 56/164 (34.15%), Postives = 82/164 (50.00%), Query Frame = 2
Query:  104 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNI 577
            AP +    +K++ +G+  VGKTSII R+++  F   Y+ATIG+DF  K +  + RT VRLQLWD AGQERF ++   Y +                F    KW ++    V    GS +  VL+ NK D  +    +  + +   +E     + ETSAK   NI
Sbjct:   20 APETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGALVVFDISRGSPFEAVLKWKNDLDSKVHLPNGSPIPAVLLANKCDQKKDSGQNPSQMDQFCKEHGFTGWFETSAKDNINI 183          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAS_LACBI (Ras-like protein OS=Laccaria bicolor PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.983e-15
Identity = 51/158 (32.28%), Postives = 81/158 (51.27%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 589
            L +YKLV +G    GK+ +  + +   F + Y  TI   +  K   ++D    L + DTAGQE + ++   Y+R             RQSF     +  ++   +  D   I++VGNK DL ++R VS +EGE+ +R+    FIETSAK+  N++  F
Sbjct:    6 LREYKLVVVGGGGEGKSCLTIQLIQSHFVDEYDPTIEESY-RKQCVIDDEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKDYFPIIVVGNKCDLDKERVVSKQEGESLARQFGCKFIETSAKSRINVENAF 162          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RASZ_DICDI (Ras-like protein rasZ OS=Dictyostelium discoideum GN=rasZ PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.983e-15
Identity = 54/175 (30.86%), Postives = 93/175 (53.14%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGM-ETLSSQSKKK 649
            +L  +GD  VGKT++  +F+ + F   Y  TI  D   K   ++D+   L + DTAGQ+   ++   +IR             R SF     + +++ R     DV I+++GNK+DL ++RQV+ +EG+  +R L + F+E SAK+  NI+ +F +   ++    E+L  + K K
Sbjct:   11 RLCIMGDGGVGKTAVTIQFISNHFVYYYDPTIE-DSYRKQCVIDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFVLVYSITSRSSFDQVQFFREQIIRVLDRDDVPIMMIGNKSDLDDERQVTYQEGKDLARCLGMSFMEVSAKSRANIEEVFNETVRSVKRREESLLKKDKSK 184          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RASS_DICDI (Ras-like protein rasS OS=Dictyostelium discoideum GN=rasS PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.983e-15
Identity = 52/158 (32.91%), Postives = 82/158 (51.90%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            +KLV +G   VGK+ +  +F+  KF + Y  T+   +  +T  ++     L ++DTAGQE F ++   Y+R              QSF    +  + +   +  D +  VLVGNK DL E R+VS  EGE  +++LN  F+ETSAK   N+   F ++
Sbjct:    4 FKLVLVGPGGVGKSCLTIQFIAQKFVDEYDPTLEDSYRKQTT-VDGEECLLDIYDTAGQEDFSAVRDQYMRTGEGFLCVYSITYLQSFKEIHRLHNHLLKVKDLDSVPFVLVGNKCDLNEYREVSTAEGEELAKKLNCKFLETSAKERINVSESFYEL 160          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAS1_PHYPO (Ras-like protein 1 OS=Physarum polycephalum GN=RAS1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.983e-15
Identity = 48/161 (29.81%), Postives = 87/161 (54.04%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + +++ T  L + DTAGQE + ++   Y+R             R SF   + + +++   +  D + +++VGNK DL  +RQV+  EG+  +R     F+ETSAK+  N++  F ++
Sbjct:    1 MTEYKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIE-DSYRKQVTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDKVPMIVVGNKCDLEGERQVTTGEGQDLARSFGCPFMETSAKSRVNVEESFYQL 160          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: DJ27A_XENLA (DnaJ homolog subfamily C member 27-A OS=Xenopus laevis GN=dnajc27-A PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.983e-15
Identity = 44/167 (26.35%), Postives = 85/167 (50.90%), Query Frame = 2
Query:  125 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERG-----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            + K++ +G+  VGK+ II R+   +F   YQATIGID+    ++++DR +++ ++D AG   F  +   + +             +++F +   W+ E++ E G      +++  +  NK D  + R V   EG   S     ++ ETSA++G  I  +F+   +A+
Sbjct:   16 RIKVISMGNAEVGKSCIIKRYCEKRFVPKYQATIGIDYGVTKVHIKDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGHKETFESLDGWLAEMKQELGPQGNIDNIVFAVCANKIDSTKHRSVDESEGRLWSESKGFLYFETSAQSGEGINEMFQAFYSAI 182          
The following BLAST results are available for this feature:
BLAST of FC920882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASV_DICDI1.163e-1531.14Ras-like protein rasV OS=Dictyostelium discoideum ... [more]
RASL_COLTR1.163e-1532.30Ras-like protein OS=Colletotrichum trifolii GN=RAS... [more]
RAS2_DROME1.163e-1532.91Ras-like protein 2 OS=Drosophila melanogaster GN=R... [more]
RAS1_RHIRA1.163e-1532.52Ras-like protein 1 OS=Rhizomucor racemosus GN=RAS1... [more]
RAB32_PIG1.518e-1534.15Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 ... [more]
RAS_LACBI1.983e-1532.28Ras-like protein OS=Laccaria bicolor PE=2 SV=1[more]
RASZ_DICDI1.983e-1530.86Ras-like protein rasZ OS=Dictyostelium discoideum ... [more]
RASS_DICDI1.983e-1532.91Ras-like protein rasS OS=Dictyostelium discoideum ... [more]
RAS1_PHYPO1.983e-1529.81Ras-like protein 1 OS=Physarum polycephalum GN=RAS... [more]
DJ27A_XENLA1.983e-1526.35DnaJ homolog subfamily C member 27-A OS=Xenopus la... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32014C04EF RVDevelop1 Citrus clementina cDNA clone C32014C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920882 ID=FC920882; Name=FC920882; organism=Citrus clementina; type=EST; length=712bp
ACACTGAACAGAGTCCTGGCTTTACTAAAATTGCTTCAGCTTATTAAACA
AATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAAA
ATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAGA
TCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAAT
TCGATAACACCTATCAGGCTACAATTGGTATTGACTTCCTTTCAAAAACT
ATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTGG
ACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCTG
TTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACACT
TCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCAT
TGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCCA
TAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGAA
ACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTGC
TGCAGCATTGCCAGGGATGGAAACACTTTCTTCACAAAGCAAGAAGAAAT
GGTTGACGTGAATCTGAGGTCTACAACTGGCAATGCATCACAGTCCCAGT
CTCAGTCAAGTG
back to top