FC920882

Overview
NameFC920882
Unique NameFC920882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RASG_DICDI (Ras-like protein rasG OS=Dictyostelium discoideum GN=rasG PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.590e-15
Identity = 55/182 (30.22%), Postives = 94/182 (51.65%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF----RKIAAALPGMETLSSQSKKK 649
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + +++ T  L + DTAGQE + ++   Y+R             R SF   + + +++   +  D V +++VGNK DL   RQV+  EG+  ++     F+ETSAK   N++  F    R+I   L G ++   + KKK
Sbjct:    1 MTEYKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIE-DSYRKQVTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDRVPMIVVGNKCDLESDRQVTTGEGQDLAKSFGSPFLETSAKIRVNVEEAFYSLVREIRKDLKG-DSKPEKGKKK 180          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAS_SCHPO (Ras-like protein 1 OS=Schizosaccharomyces pombe GN=ras1 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.382e-15
Identity = 50/165 (30.30%), Postives = 82/165 (49.70%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            L +YKLV +GD  VGK+++  + +   F + Y  TI  D   K   ++     L + DTAGQE + ++   Y+R             R SF   S +  ++   +  D   +VLV NK DL  +R VS  EGE  ++ ++ +++ETSAK   N++  F  +   +
Sbjct:    6 LREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIE-DSYRKKCEIDGEGALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTI 169          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.382e-15
Identity = 50/170 (29.41%), Postives = 91/170 (53.53%), Query Frame = 2
Query:  122 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETL 628
            A +KL+ +GD   GKT+++ R +  +F   Y AT+G++ + + ++  +R V R+ +WDTAGQER+  L   Y                 ++ N  +W  ++    G ++ IV+ GNK D++ K+  + ++G    R+ N+  IE SAK+ +N++  F  +   L G  +L
Sbjct:    9 AIFKLILIGDGGTGKTTLVKRHLTGEFKMQYNATLGVE-VEQLLFNTNRGVFRIDVWDTAGQERYGGLRDGYFVQSQCAIIMFDVASSNTYNNVKRWHRDLVRVCG-NIPIVICGNKVDIMHKK--TWKKGVDFDRKTNIYLIEMSAKSNYNVEKPFVYLLRKLVGDPSL 174          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RRAS_HUMAN (Ras-related protein R-Ras OS=Homo sapiens GN=RRAS PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 53/162 (32.72%), Postives = 79/162 (48.77%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            +KLV +G   VGK+++  +F+   F + Y  TI  D  +K   ++    RL + DTAGQE F ++   Y+R             RQSF    K   ++ R +   D  +VLVGNK DL  +RQV   E  A     +V + E SAK   N+   F ++  A+
Sbjct:   30 HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 190          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAS_BOTFU (Ras-like protein OS=Botryotinia fuckeliana GN=ras1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 52/161 (32.30%), Postives = 80/161 (49.69%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            L +YKLV +G   VGK+ +  + +   F + Y  TI  D   K   +++    L + DTAGQE + ++   Y+R             RQSF     +  ++   +  D   I++VGNK DL  +RQVS +EG+  + +    FIETSAK+  N+   F  I
Sbjct:    6 LREYKLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTIE-DSYRKQCVIDEEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKDYFPIIVVGNKCDLEGERQVSKQEGQQLADDFGCKFIETSAKSRINVDNAFYDI 165          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB28_MOUSE (Ras-related protein Rab-28 OS=Mus musculus GN=Rab28 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 55/168 (32.74%), Postives = 81/168 (48.21%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT---ERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 622
            K+V LGD + GKTS+ T F  + F   Y+ TIG+DF  + + L  +  V LQ+WD  GQ     ++  YI               QSF N   W   V+T   E  +  ++ LVGNK DL   R V  ++     +E        SAK G ++   F+K+AA + G++
Sbjct:   14 KIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKADKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 181          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAS_CRYNE (Ras-like protein OS=Cryptococcus neoformans GN=RAS1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.769e-15
Identity = 52/171 (30.41%), Postives = 81/171 (47.37%), Query Frame = 2
Query:  101 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            M+    L +YKLV +G   VGK+++  +F+   F + Y  TI  D   K   +++    L + DTAGQE + ++   Y+R             R SF   S +  ++   +  D   +V+V NK DL  +RQV   EG   ++  N   IETSAK   N+   F  +  A+
Sbjct:    1 MSKAQFLREYKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIE-DSYRKQCIIDEEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRSSFEEVSTFHQQILRVKDKDYFPVVVVANKCDLEYERQVQPHEGRDLAKRFNAQCIETSAKQRVNVDEAFIAVVRAI 170          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB7B_DICDI (Ras-related protein Rab-7B OS=Dictyostelium discoideum GN=rab7B PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.769e-15
Identity = 56/165 (33.94%), Postives = 91/165 (55.15%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV--RTERGSDVI--IVLVGNKTDLVEKRQVSIEEGEAKSRELNV----MFIETSAKAGFNIKPLFRKIA 601
            K+V +G++SVGKTSI+ R++ DK   T + TIG+DF+     + +  V LQLWDT+GQERFRSL  SY R              ++  +   W D+   +TE    ++   +++GNK D  +  +V  E+   +  + N+     + +TSAK   NI+ +F+ I+
Sbjct:    9 KVVIIGEKSVGKTSILRRYV-DKRFVTLKPTIGVDFVM----VSENMVTLQLWDTSGQERFRSLEISYYRGADYCILVFDVTNEKTLYDLKLWRDDFIEKTEIRDPILFPFIILGNKID--DPNRVVTEKAAIQWCKDNIGGNLTYFDTSAKDNINIEQVFKHIS 166          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RRAS_MOUSE (Ras-related protein R-Ras OS=Mus musculus GN=Rras PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 53/162 (32.72%), Postives = 80/162 (49.38%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            +KLV +G   VGK+++  +F+   F + Y  TI  D  +K   ++    RL + DTAGQE F ++   Y+R             RQSF    K   ++ R +   D  IVLVGNK DL  +RQV   E  + S   ++ + E SAK   N+   F ++  A+
Sbjct:   30 HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICTVDGIPARLDILDTAGQEEFGAMREQYMRAGNGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPIVLVGNKADLENQRQVLRSEASSFSASHHMTYFEASAKLRLNVDEAFEQLVRAV 190          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 53/175 (30.29%), Postives = 86/175 (49.14%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD----LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLS 631
            +A++KLV +GD  VGKT+ +TR    +F+  Y AT G++  +  ++     +R  +WDTAGQE+   L   Y               R ++ N  KW  ++ T    +V IVLVGNK D     V+ RQ++        R+ ++ + + SAK+ +  +  F  I   L G   L+
Sbjct:    9 VAEFKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMILHTTKGAIRFNIWDTAGQEKLGGLREGYYIGADAAIMMFDVTSRITYKNIPKWHKDL-TRICENVPIVLVGNKVDSKDSKVKARQITFH------RKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPNLN 176          
The following BLAST results are available for this feature:
BLAST of FC920882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASG_DICDI2.590e-1530.22Ras-like protein rasG OS=Dictyostelium discoideum ... [more]
RAS_SCHPO3.382e-1530.30Ras-like protein 1 OS=Schizosaccharomyces pombe GN... [more]
RANL_DROME3.382e-1529.41GTP-binding nuclear protein Ran-like OS=Drosophila... [more]
RRAS_HUMAN4.418e-1532.72Ras-related protein R-Ras OS=Homo sapiens GN=RRAS ... [more]
RAS_BOTFU4.418e-1532.30Ras-like protein OS=Botryotinia fuckeliana GN=ras1... [more]
RAB28_MOUSE4.418e-1532.74Ras-related protein Rab-28 OS=Mus musculus GN=Rab2... [more]
RAS_CRYNE5.769e-1530.41Ras-like protein OS=Cryptococcus neoformans GN=RAS... [more]
RAB7B_DICDI5.769e-1533.94Ras-related protein Rab-7B OS=Dictyostelium discoi... [more]
RRAS_MOUSE7.535e-1532.72Ras-related protein R-Ras OS=Mus musculus GN=Rras ... [more]
RAN_TETPY7.535e-1530.29GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]

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Properties
Property NameValue
Genbank descriptionC32014C04EF RVDevelop1 Citrus clementina cDNA clone C32014C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920882 ID=FC920882; Name=FC920882; organism=Citrus clementina; type=EST; length=712bp
ACACTGAACAGAGTCCTGGCTTTACTAAAATTGCTTCAGCTTATTAAACA
AATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAAA
ATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAGA
TCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAAT
TCGATAACACCTATCAGGCTACAATTGGTATTGACTTCCTTTCAAAAACT
ATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTGG
ACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCTG
TTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACACT
TCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCAT
TGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCCA
TAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGAA
ACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTGC
TGCAGCATTGCCAGGGATGGAAACACTTTCTTCACAAAGCAAGAAGAAAT
GGTTGACGTGAATCTGAGGTCTACAACTGGCAATGCATCACAGTCCCAGT
CTCAGTCAAGTG
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