FC920882

Overview
NameFC920882
Unique NameFC920882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB28_RAT (Ras-related protein Rab-28 OS=Rattus norvegicus GN=Rab28 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 55/168 (32.74%), Postives = 81/168 (48.21%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT---ERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 622
            K+V LGD + GKTS+ T F  + F   Y+ TIG+DF  + + L  +  V LQ+WD  GQ     ++  YI               QSF N   W   V+T   E  +  ++ LVGNK DL   R V  ++     +E        SAK G ++   F+K+AA + G++
Sbjct:   14 KIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKPDKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 181          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB28_HUMAN (Ras-related protein Rab-28 OS=Homo sapiens GN=RAB28 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 54/168 (32.14%), Postives = 81/168 (48.21%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 622
            K+V LGD + GKTS+ T F  + F   Y+ TIG+DF  + + L  +  V LQ+WD  GQ     ++  YI               QSF N   W   + +V  E  +  ++ LVGNK DL   R +  E+     +E        SAK G ++   F+K+AA + G++
Sbjct:   14 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 181          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RASL_COPCI (24 kDa Ras-like protein OS=Coprinopsis cinerea GN=CC-RAS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 50/161 (31.06%), Postives = 78/161 (48.45%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            L +YKLV +G   VGK+++  +F+   F + Y  TI  D   K   ++D    L + DTAGQE + ++   Y+R             R SF   S +  ++   +  D   +++V NK DL  +RQV + EG   ++     FIETSAK   N+   F  +
Sbjct:    8 LREYKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIE-DSYRKQCIIDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISIFHQQILRVKDQDSFPVIVVANKCDLEYERQVGMNEGRDLAKHFGCKFIETSAKQRINVDEAFSNL 167          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAS3_DROME (Ras-like protein 3 OS=Drosophila melanogaster GN=R PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 53/178 (29.78%), Postives = 89/178 (50.00%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKKK 649
            + +YK+V LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG E+F ++   Y++             + +F +     +++ R +   DV +VLVGNK DL E+R V  E G+  + + N  F+ETSAKA  N+  +F  +   +        Q K K
Sbjct:    1 MREYKIVVLGSGGVGKSALTVQFVQCIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKELGKNLATQFNCAFMETSAKAKVNVNDIFYDLVRQINKKSPEKKQKKPK 177          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 51/167 (30.54%), Postives = 81/167 (48.50%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETL 628
            +KLV +GD   GKT+ + R +  +F+  Y+ TIG++      +     +R   WDTAGQE+F  L   Y               R ++ N   W  ++      ++ IVL GNK D V+ RQV  ++     R+ N+ + E SAK+ +N +  F  +A  L G + L
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNL 177          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAN1_ARATH (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 51/167 (30.54%), Postives = 81/167 (48.50%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETL 628
            +KLV +GD   GKT+ + R +  +F+  Y+ TIG++      +     +R   WDTAGQE+F  L   Y               R ++ N   W  ++      ++ IVL GNK D V+ RQV  ++     R+ N+ + E SAK+ +N +  F  +A  L G + L
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNL 177          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB28_BOVIN (Ras-related protein Rab-28 OS=Bos taurus GN=RAB28 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 55/168 (32.74%), Postives = 80/168 (47.62%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 622
            K+V LGD + GKTS+ T F  + F   Y+ TIG+DF  + + L     V LQ+WD  GQ     ++  YI               QSF N   W   + +V  E  +  ++ LVGNK DL   R V  E+     +E        SAK G ++   F+K+AA + G++
Sbjct:   14 KIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGSLNVTLQVWDIGGQTIGGKMLDKYIYGAQGVLLVYDVTNYQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 181          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RASW_DICDI (Ras-like protein rasW OS=Dictyostelium discoideum GN=rasW PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 52/173 (30.06%), Postives = 86/173 (49.71%), Query Frame = 2
Query:  134 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKKK 649
            L  +GD  VGKT++  +F+ + F   Y  TI  D   K   ++D+   L + DTAGQ+   ++   +IR             R SF     + +++ R     DV I+++GNK DL ++RQV+ +EG+  +R L + F+E SAK   N++ +F +    +   E   S    K
Sbjct:   12 LCIMGDGGVGKTAVTIQFISNHFVYYYDPTIE-DSYRKQCLVDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFILVYSVTSRSSFDQIQFFREQIIRVLDSDDVPIMMIGNKIDLDDERQVTFQEGKDLARCLGMSFMEVSAKNRTNVEEVFNETVRIVKRKEDPQSHKPSK 183          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB28_PONAB (Ras-related protein Rab-28 OS=Pongo abelii GN=RAB28 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 54/168 (32.14%), Postives = 81/168 (48.21%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 622
            K+V LGD + GKTS+ T F  + F   Y+ TIG+DF  + + L  +  V LQ+WD  GQ     ++  YI               QSF N   W   + +V  E  +  ++ LVGNK DL   R +  E+     +E        SAK G ++   F+K+AA + G++
Sbjct:   14 KIVVLGDGASGKTSLATCFAQETFGKRYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETRPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 181          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RSR1_YEAST (Ras-related protein RSR1 OS=Saccharomyces cerevisiae GN=RSR1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 54/156 (34.62%), Postives = 84/156 (53.85%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLVEKRQVSIEEG-EAKSRELNVMFIETSAKAGFNIKPLF 589
            YKLV LG   VGK+ +  +F+   + +TY  TI  D   KT+ ++++   L++ DTAG  +F ++   YI+             RQS     +  ++V   + SD V +VL+GNK DL+ +R +S+EEG E  S+   V F ETSA    N+  +F
Sbjct:    4 YKLVVLGAGGVGKSCLTVQFVQGVYLDTYDPTIE-DSYRKTIEIDNKVFDLEILDTAGIAQFTAMRELYIKSGMGFLLVYSVTDRQSLEELMELREQVLRIKDSDRVPMVLIGNKADLINERVISVEEGIEVSSKWGRVPFYETSALLRSNVDEVF 158          
The following BLAST results are available for this feature:
BLAST of FC920882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB28_RAT7.535e-1532.74Ras-related protein Rab-28 OS=Rattus norvegicus GN... [more]
RAB28_HUMAN7.535e-1532.14Ras-related protein Rab-28 OS=Homo sapiens GN=RAB2... [more]
RASL_COPCI9.841e-1531.0624 kDa Ras-like protein OS=Coprinopsis cinerea GN=... [more]
RAS3_DROME9.841e-1529.78Ras-like protein 3 OS=Drosophila melanogaster GN=R... [more]
RAN2_ARATH9.841e-1530.54GTP-binding nuclear protein Ran-2 OS=Arabidopsis t... [more]
RAN1_ARATH9.841e-1530.54GTP-binding nuclear protein Ran-1 OS=Arabidopsis t... [more]
RAB28_BOVIN9.841e-1532.74Ras-related protein Rab-28 OS=Bos taurus GN=RAB28 ... [more]
RASW_DICDI1.285e-1430.06Ras-like protein rasW OS=Dictyostelium discoideum ... [more]
RAB28_PONAB1.285e-1432.14Ras-related protein Rab-28 OS=Pongo abelii GN=RAB2... [more]
RSR1_YEAST1.679e-1434.62Ras-related protein RSR1 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionC32014C04EF RVDevelop1 Citrus clementina cDNA clone C32014C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920882 ID=FC920882; Name=FC920882; organism=Citrus clementina; type=EST; length=712bp
ACACTGAACAGAGTCCTGGCTTTACTAAAATTGCTTCAGCTTATTAAACA
AATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAAA
ATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAGA
TCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAAT
TCGATAACACCTATCAGGCTACAATTGGTATTGACTTCCTTTCAAAAACT
ATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTGG
ACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCTG
TTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACACT
TCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCAT
TGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCCA
TAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGAA
ACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTGC
TGCAGCATTGCCAGGGATGGAAACACTTTCTTCACAAAGCAAGAAGAAAT
GGTTGACGTGAATCTGAGGTCTACAACTGGCAATGCATCACAGTCCCAGT
CTCAGTCAAGTG
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