FC920882

Overview
NameFC920882
Unique NameFC920882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RASB_DICDI (Ras-like protein rasB OS=Dictyostelium discoideum GN=rasB PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 54/180 (30.00%), Postives = 89/180 (49.44%), Query Frame = 2
Query:  110 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKK 646
            +S   +YKLV +G   VGK+++  +F+ + F   Y  TI  D   +   +++ T  L + DTAGQ+ + ++   Y+R             R SF   +   +++ R +    V IVLVGNK DL   R+V+  EG   ++  +V F+ETSAK   N+   F ++   +        +SKK
Sbjct:    1 MSVSNEYKLVVMGGGGVGKSALTIQFIQNHFIEEYDPTIE-DSYRRQCQVDEDTCLLDILDTAGQDDYSAMRDQYMRTGQGFLCVYDVTSRTSFEEINVVREQIIRVKDNDKVPIVLVGNKCDLENLREVTEGEGSELAKSFSVPFLETSAKKRLNVDECFFEVVREIKKSLKEPGRSKK 179          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAP1B_CYPCA (Ras-related protein Rap-1b OS=Cyprinus carpio GN=rap1b PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 51/179 (28.49%), Postives = 94/179 (52.51%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKKK 649
            + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG E+F ++   Y++             + +F +     +++ R +   DV I+LVGNK DL ++R V  E+G+  +R+ N   F+E+SAK+  N+  +F  +   +     +  +++KK
Sbjct:    1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPIILVGNKCDLEDERVVGKEQGQNLARQWNSCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKK 178          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSJ (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica GN=RAN1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 50/163 (30.67%), Postives = 79/163 (48.47%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPG 616
            +KLV +GD   GKT+ + R +  +F+  Y+ TIG++      +     +R   WDTAGQE+F  L   Y               R ++ N   W  ++      ++ IVL GNK D V+ RQV  ++     R+ N+ + E SAK+ +N +  F  +A  L G
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL-CRVCENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAG 173          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSI (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. indica GN=RAN1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 50/163 (30.67%), Postives = 79/163 (48.47%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPG 616
            +KLV +GD   GKT+ + R +  +F+  Y+ TIG++      +     +R   WDTAGQE+F  L   Y               R ++ N   W  ++      ++ IVL GNK D V+ RQV  ++     R+ N+ + E SAK+ +N +  F  +A  L G
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL-CRVCENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAG 173          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: DJ27B_XENLA (DnaJ homolog subfamily C member 27-B OS=Xenopus laevis GN=dnajc27-B PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 44/170 (25.88%), Postives = 84/170 (49.41%), Query Frame = 2
Query:  125 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERG--------SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            + K++ +G+  VGK+ II R+   +F   YQATIGID+    + ++DR +++ ++D AG   F  +   + +             ++SF +   W+ E++ E G         +++  +  NK D  + R V   EG   S     ++ ETSA++G  I  +F+   +++
Sbjct:   16 RIKVISMGNAEVGKSCIIKRYCEKRFVPKYQATIGIDYGVTKVQIKDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKESFESLDAWLAEMKQELGPQINIDNLDNIVFAVCANKIDSTKHRCVDESEGRLWSESKGFLYFETSAQSGEGINEMFQAFYSSI 185          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAYL_BOVIN (Putative GTP-binding protein RAY-like OS=Bos taurus GN=RABL4 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 52/162 (32.10%), Postives = 82/162 (50.62%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            K +  GD +VGKT++   F  D   F   Y  T G+D + KT+ + D   +V L ++D+AG+E F  ++                   QSF N SKW+++ R++  G+ +  VLVGNKTDL  +R V + + +A +    +   ETS K   N +  F  +A
Sbjct:    7 KCILAGDPTVGKTALAQLFRSDGAHFQKNYTLTTGVDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYDVTNEQSFTNCSKWLEKARSQIPGTTLPGVLVGNKTDLAGRRVVDVAQAQAWALGQGLECFETSVKEMENYEAPFHYLA 168          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RASH_MSVHA (Transforming protein p29 OS=Harvey murine sarcoma virus GN=H-RAS PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 50/163 (30.67%), Postives = 85/163 (52.15%), Query Frame = 2
Query:  104 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 589
            APV A+ +YKLV +G + VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK DL   R V   + +  +R   + +IETSAK    ++  F
Sbjct:   48 APVEAMTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 208          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 50/163 (30.67%), Postives = 79/163 (48.47%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPG 616
            +KLV +GD   GKT+ + R +  +F+  Y+ TIG++      +     +R   WDTAGQE+F  L   Y               R ++ N   W  ++      ++ IVL GNK D V+ RQV  ++     R+ N+ + E SAK+ +N +  F  +A  L G
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 50/163 (30.67%), Postives = 79/163 (48.47%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPG 616
            +KLV +GD   GKT+ + R +  +F+  Y+ TIG++      +     +R   WDTAGQE+F  L   Y               R ++ N   W  ++      ++ IVL GNK D V+ RQV  ++     R+ N+ + E SAK+ +N +  F  +A  L G
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 50/163 (30.67%), Postives = 79/163 (48.47%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPG 616
            +KLV +GD   GKT+ + R +  +F+  Y+ TIG++      +     +R   WDTAGQE+F  L   Y               R ++ N   W  ++      ++ IVL GNK D V+ RQV  ++     R+ N+ + E SAK+ +N +  F  +A  L G
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173          
The following BLAST results are available for this feature:
BLAST of FC920882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASB_DICDI1.679e-1430.00Ras-like protein rasB OS=Dictyostelium discoideum ... [more]
RAP1B_CYPCA1.679e-1428.49Ras-related protein Rap-1b OS=Cyprinus carpio GN=r... [more]
RAN1_ORYSJ1.679e-1430.67GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RAN1_ORYSI1.679e-1430.67GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
DJ27B_XENLA1.679e-1425.88DnaJ homolog subfamily C member 27-B OS=Xenopus la... [more]
RAYL_BOVIN2.192e-1432.10Putative GTP-binding protein RAY-like OS=Bos tauru... [more]
RASH_MSVHA2.192e-1430.67Transforming protein p29 OS=Harvey murine sarcoma ... [more]
RAN_VICFA2.192e-1430.67GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ... [more]
RANB1_TOBAC2.192e-1430.67GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta... [more]
RANA1_TOBAC2.192e-1430.67GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionC32014C04EF RVDevelop1 Citrus clementina cDNA clone C32014C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920882 ID=FC920882; Name=FC920882; organism=Citrus clementina; type=EST; length=712bp
ACACTGAACAGAGTCCTGGCTTTACTAAAATTGCTTCAGCTTATTAAACA
AATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAAA
ATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAGA
TCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAAT
TCGATAACACCTATCAGGCTACAATTGGTATTGACTTCCTTTCAAAAACT
ATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTGG
ACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCTG
TTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACACT
TCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCAT
TGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCCA
TAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGAA
ACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTGC
TGCAGCATTGCCAGGGATGGAAACACTTTCTTCACAAAGCAAGAAGAAAT
GGTTGACGTGAATCTGAGGTCTACAACTGGCAATGCATCACAGTCCCAGT
CTCAGTCAAGTG
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