FC920882

Overview
NameFC920882
Unique NameFC920882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAP1B_PANTR (Ras-related protein Rap-1b OS=Pan troglodytes GN=RAP1B PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 50/179 (27.93%), Postives = 94/179 (52.51%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKKK 649
            + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK DL ++R V  E+G+  +R+  N  F+E+SAK+  N+  +F  +   +     +  +++KK
Sbjct:    1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKK 178          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAP1B_MOUSE (Ras-related protein Rap-1b OS=Mus musculus GN=Rap1b PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 50/179 (27.93%), Postives = 94/179 (52.51%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKKK 649
            + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK DL ++R V  E+G+  +R+  N  F+E+SAK+  N+  +F  +   +     +  +++KK
Sbjct:    1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKK 178          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAP1B_MACFA (Ras-related protein Rap-1b OS=Macaca fascicularis GN=RAP1B PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 50/179 (27.93%), Postives = 94/179 (52.51%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKKK 649
            + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK DL ++R V  E+G+  +R+  N  F+E+SAK+  N+  +F  +   +     +  +++KK
Sbjct:    1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKK 178          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAP1B_HUMAN (Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1B PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 50/179 (27.93%), Postives = 94/179 (52.51%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKKK 649
            + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK DL ++R V  E+G+  +R+  N  F+E+SAK+  N+  +F  +   +     +  +++KK
Sbjct:    1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKK 178          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAP1B_CHICK (Ras-related protein Rap-1b OS=Gallus gallus GN=RAP1B PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 50/179 (27.93%), Postives = 94/179 (52.51%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKKK 649
            + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK DL ++R V  E+G+  +R+  N  F+E+SAK+  N+  +F  +   +     +  +++KK
Sbjct:    1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKK 178          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAP1B_BOVIN (Ras-related protein Rap-1b OS=Bos taurus GN=RAP1B PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 50/179 (27.93%), Postives = 94/179 (52.51%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKKK 649
            + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK DL ++R V  E+G+  +R+  N  F+E+SAK+  N+  +F  +   +     +  +++KK
Sbjct:    1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKK 178          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: GSP1_ASHGO (GTP-binding nuclear protein GSP1/Ran OS=Ashbya gossypii GN=GSP1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 52/168 (30.95%), Postives = 82/168 (48.81%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIKPLFRKIAAALPG 616
            +KLV +GD   GKT+ + R +  +F+  Y ATIG++      Y     ++  +WDTAGQE+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ E++       +AK+    R+ N+ + + SAK+ +N +  F  +A  L G
Sbjct:    8 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKERKV------KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAG 167          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RP1BL_HUMAN (Ras-related protein Rap-1b-like protein OS=Homo sapiens PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.379e-14
Identity = 49/179 (27.37%), Postives = 95/179 (53.07%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKKK 649
            + +YKLV LG + VGK+++  +F+   F   Y  TI  D   + + ++ +   L++ DTAG E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK DL ++R V  E+G+  +R+  N  F+E+SAK+  N+  +F  +   +     +  +++KK
Sbjct:    1 MREYKLVVLGSRGVGKSALTVQFVQGIFVEKYDPTIE-DSYREQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKK 178          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: DJC27_PONAB (DnaJ homolog subfamily C member 27 OS=Pongo abelii GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.379e-14
Identity = 44/161 (27.33%), Postives = 79/161 (49.07%), Query Frame = 2
Query:  125 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERG-----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFR 592
            + K++ +G+  VGK+ II R+   +F + Y ATIGID+    +++ DR +++ ++D AG   F  +   + +             + SF     W+ E++ E G      ++I V+  NK D  + R V   EG   +     ++ ETSA+ G  I  +F+
Sbjct:   16 RIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQELGPHGNMENIIFVVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMFQ 176          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: DJC27_HUMAN (DnaJ homolog subfamily C member 27 OS=Homo sapiens GN=DNAJC27 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.379e-14
Identity = 44/161 (27.33%), Postives = 79/161 (49.07%), Query Frame = 2
Query:  125 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERG-----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFR 592
            + K++ +G+  VGK+ II R+   +F + Y ATIGID+    +++ DR +++ ++D AG   F  +   + +             + SF     W+ E++ E G      ++I V+  NK D  + R V   EG   +     ++ ETSA+ G  I  +F+
Sbjct:   16 RIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQELGPHGNMENIIFVVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMFQ 176          
The following BLAST results are available for this feature:
BLAST of FC920882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP1B_PANTR4.884e-1427.93Ras-related protein Rap-1b OS=Pan troglodytes GN=R... [more]
RAP1B_MOUSE4.884e-1427.93Ras-related protein Rap-1b OS=Mus musculus GN=Rap1... [more]
RAP1B_MACFA4.884e-1427.93Ras-related protein Rap-1b OS=Macaca fascicularis ... [more]
RAP1B_HUMAN4.884e-1427.93Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1... [more]
RAP1B_CHICK4.884e-1427.93Ras-related protein Rap-1b OS=Gallus gallus GN=RAP... [more]
RAP1B_BOVIN4.884e-1427.93Ras-related protein Rap-1b OS=Bos taurus GN=RAP1B ... [more]
GSP1_ASHGO4.884e-1430.95GTP-binding nuclear protein GSP1/Ran OS=Ashbya gos... [more]
RP1BL_HUMAN6.379e-1427.37Ras-related protein Rap-1b-like protein OS=Homo sa... [more]
DJC27_PONAB6.379e-1427.33DnaJ homolog subfamily C member 27 OS=Pongo abelii... [more]
DJC27_HUMAN6.379e-1427.33DnaJ homolog subfamily C member 27 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC32014C04EF RVDevelop1 Citrus clementina cDNA clone C32014C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920882 ID=FC920882; Name=FC920882; organism=Citrus clementina; type=EST; length=712bp
ACACTGAACAGAGTCCTGGCTTTACTAAAATTGCTTCAGCTTATTAAACA
AATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAAA
ATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAGA
TCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAAT
TCGATAACACCTATCAGGCTACAATTGGTATTGACTTCCTTTCAAAAACT
ATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTGG
ACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCTG
TTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACACT
TCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCAT
TGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCCA
TAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGAA
ACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTGC
TGCAGCATTGCCAGGGATGGAAACACTTTCTTCACAAAGCAAGAAGAAAT
GGTTGACGTGAATCTGAGGTCTACAACTGGCAATGCATCACAGTCCCAGT
CTCAGTCAAGTG
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