FC920882

Overview
NameFC920882
Unique NameFC920882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10292 contig Ccv1_Contig10292:2..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RASK_CYPCA (GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14
Identity = 53/179 (29.61%), Postives = 89/179 (49.72%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL-PGMETLSSQSKKK 649
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTAGQE + ++   Y+R              +SF +   + +++ R +   DV +VLVGNK DL   R V  ++ +  +R   + FIETSAK    +   F  +   +    E +S + KKK
Sbjct:    1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRSVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKEGKKK 177          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAPA_DISOM (Ras-related protein O-Krev OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14
Identity = 51/179 (28.49%), Postives = 92/179 (51.40%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQSKKK 649
            + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK DL ++R V  E+G+  +R+  N  F+E+SAK+  N+  +F  +   +     +    KKK
Sbjct:    1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQPCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKAPVEKCKKKK 178          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAN_SALSA (GTP-binding nuclear protein Ran OS=Salmo salar GN=ran PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14
Identity = 52/177 (29.38%), Postives = 85/177 (48.02%), Query Frame = 2
Query:  101 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIKPLFRKIAAALPG 616
            MA      ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQE+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ +++       +AKS    R+ N+ + + SAK+ +N +  F  +A  L G
Sbjct:    1 MAEGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAN_DANRE (GTP-binding nuclear protein Ran OS=Danio rerio GN=ran PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14
Identity = 52/177 (29.38%), Postives = 85/177 (48.02%), Query Frame = 2
Query:  101 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIKPLFRKIAAALPG 616
            MA      ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQE+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ +++       +AKS    R+ N+ + + SAK+ +N +  F  +A  L G
Sbjct:    1 MAENEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAN4_ARATH (GTP-binding nuclear protein Ran-4 OS=Arabidopsis thaliana GN=RAN4 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14
Identity = 48/171 (28.07%), Postives = 83/171 (48.54%), Query Frame = 2
Query:  119 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLS 631
            L  +KL+ +GD   GKT+ + R +  +F++  + T+G+D      +     +R + WDTAGQE++  L  +Y               R +++N  +W  ++R     ++ IVL GNK D V  RQ+   +  +  R+  + + E SAK   N +  F  +A  + G   LS
Sbjct:   11 LPTFKLLIVGDGGTGKTTFLKRHLTGEFEHNTEPTLGVDIYPLDFFTNRGKIRFECWDTAGQEKYSGLKDAYYIHGQCAIIMFDVTARHTYMNIDRWYRDLR-RVCKNIPIVLCGNKVD-VPSRQIK-PKHVSYHRKKCLQYYEMSAKNNCNFEKPFLYLARRIAGDAKLS 178          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSJ (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. japonica GN=RAN3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14
Identity = 49/163 (30.06%), Postives = 78/163 (47.85%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPG 616
            +KL+ +GD   GKT+ + R +  +F+  Y+ TIG++      +     VR   WDTAGQE+F  L   Y               R ++ N   W  ++      ++ IVL GNK D+ + RQV  +      R+ N+ + E SAK+ +N +  F  +A  L G
Sbjct:   18 FKLILVGDGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDI-CRVCDNIPIVLCGNKVDM-KNRQVKAKM-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLTG 177          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSI (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. indica GN=RAN3 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14
Identity = 49/163 (30.06%), Postives = 78/163 (47.85%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPG 616
            +KL+ +GD   GKT+ + R +  +F+  Y+ TIG++      +     VR   WDTAGQE+F  L   Y               R ++ N   W  ++      ++ IVL GNK D+ + RQV  +      R+ N+ + E SAK+ +N +  F  +A  L G
Sbjct:   18 FKLILVGDGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDI-CRVCDNIPIVLCGNKVDM-KNRQVKAKM-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLTG 177          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSJ (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. japonica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14
Identity = 50/163 (30.67%), Postives = 78/163 (47.85%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPG 616
            +KLV +GD   GKT+ + R +  +F+  Y+ TIG++            +R   WDTAGQE+F  L   Y               R ++ N   W  ++      ++ IVL GNK D V+ RQV  ++     R+ N+ + E SAK+ +N +  F  +A  L G
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL-CRVCENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSI (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. indica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14
Identity = 50/163 (30.67%), Postives = 78/163 (47.85%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPG 616
            +KLV +GD   GKT+ + R +  +F+  Y+ TIG++            +R   WDTAGQE+F  L   Y               R ++ N   W  ++      ++ IVL GNK D V+ RQV  ++     R+ N+ + E SAK+ +N +  F  +A  L G
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL-CRVCENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RBL2A_HUMAN (Rab-like protein 2A OS=Homo sapiens GN=RABL2A PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 48/153 (31.37%), Postives = 76/153 (49.67%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 589
            K++ LGD +VGK+ ++ RF+ D F     +T  +     T  ++ +T+ +  WDTAGQERF+S+  SY               + ++ N S W  E+R  R  ++  ++V NK D +   Q S     AK   L + F+  SA  G N+  LF
Sbjct:   23 KIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGKTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDIQRKVTYRNLSTWYTELREFR-PEIPCIVVANKIDDINVTQKSF--NFAKKFSLPLYFV--SAADGTNVVKLF 170          
The following BLAST results are available for this feature:
BLAST of FC920882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASK_CYPCA8.331e-1429.61GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1[more]
RAPA_DISOM8.331e-1428.49Ras-related protein O-Krev OS=Discopyge ommata PE=... [more]
RAN_SALSA8.331e-1429.38GTP-binding nuclear protein Ran OS=Salmo salar GN=... [more]
RAN_DANRE8.331e-1429.38GTP-binding nuclear protein Ran OS=Danio rerio GN=... [more]
RAN4_ARATH8.331e-1428.07GTP-binding nuclear protein Ran-4 OS=Arabidopsis t... [more]
RAN3_ORYSJ8.331e-1430.06GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAN3_ORYSI8.331e-1430.06GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAN2_ORYSJ8.331e-1430.67GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAN2_ORYSI8.331e-1430.67GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RBL2A_HUMAN1.088e-1331.37Rab-like protein 2A OS=Homo sapiens GN=RABL2A PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC32014C04EF RVDevelop1 Citrus clementina cDNA clone C32014C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920882 ID=FC920882; Name=FC920882; organism=Citrus clementina; type=EST; length=712bp
ACACTGAACAGAGTCCTGGCTTTACTAAAATTGCTTCAGCTTATTAAACA
AATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAAA
ATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAGA
TCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAAT
TCGATAACACCTATCAGGCTACAATTGGTATTGACTTCCTTTCAAAAACT
ATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTGG
ACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCTG
TTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACACT
TCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCAT
TGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCCA
TAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGAA
ACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTGC
TGCAGCATTGCCAGGGATGGAAACACTTTCTTCACAAAGCAAGAAGAAAT
GGTTGACGTGAATCTGAGGTCTACAACTGGCAATGCATCACAGTCCCAGT
CTCAGTCAAGTG
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