FC920882

Overview
NameFC920882
Unique NameFC920882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.414e-29
Identity = 63/158 (39.87%), Postives = 95/158 (60.13%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            +KL+ +GD  VGKT +I RF  D F++TY +TIGIDF  +T+ +E + ++LQ+WDTAGQERF+++  +Y R              +SF N   W+  ++    + V  +L+GNK D+  KRQV  E+ E  +RE  + F ETSAK+  N+   F  +A
Sbjct:    9 FKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLA 166          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.414e-29
Identity = 67/158 (42.41%), Postives = 94/158 (59.49%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  KT+ L  + ++LQ+WDTAGQERF ++  SY R              +SF N SKW+  +      DV  +L+GNK D+ +KR V   +GE  +RE  + F ETSAKA  NI+  F  +A
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLA 167          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: YPT5_SCHPO (GTP-binding protein ypt5 OS=Schizosaccharomyces pombe GN=ypt5 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.847e-29
Identity = 68/163 (41.72%), Postives = 99/163 (60.74%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV-EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALP 613
            KLV LGD +VGK+S++ RF+ D+FD+  ++TIG  FL++T+ +++ T V+L++WDTAGQER++SL P Y R               S      WI E++ +    ++I L GNK DL  E+R V   + EA + E N++F ETSAK   N+  LF  IA  LP
Sbjct:   16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLP 178          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.847e-29
Identity = 62/158 (39.24%), Postives = 95/158 (60.13%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            +KL+ +GD  VGKT +I RF  D F+NTY +TIGIDF  +T+ +E + ++LQ+WDTAGQERF+++  +Y R              +SF N   W+  ++    + V  +L+GNK D+  KR+V  E+ +  +RE  + F ETSAK+  N+   F  +A
Sbjct:    9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLA 166          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.847e-29
Identity = 62/158 (39.24%), Postives = 95/158 (60.13%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            +KL+ +GD  VGKT +I RF  D F+NTY +TIGIDF  +T+ +E + ++LQ+WDTAGQERF+++  +Y R              +SF N   W+  ++    + V  +L+GNK D+  KR+V  E+ +  +RE  + F ETSAK+  N+   F  +A
Sbjct:    9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLA 166          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.847e-29
Identity = 62/158 (39.24%), Postives = 95/158 (60.13%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            +KL+ +GD  VGKT +I RF  D F+NTY +TIGIDF  +T+ +E + ++LQ+WDTAGQERF+++  +Y R              +SF N   W+  ++    + V  +L+GNK D+  KR+V  E+ +  +RE  + F ETSAK+  N+   F  +A
Sbjct:    9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLA 166          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.413e-29
Identity = 66/158 (41.77%), Postives = 94/158 (59.49%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGID   KT+ L+ + ++LQ+WDTAGQERF ++  SY R              +SF N SKW+  +      DV  +L+GNK D+ +KR V   +GE  +RE  + F ETSAKA  NI+  F  +A
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLA 167          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.151e-29
Identity = 59/157 (37.58%), Postives = 101/157 (64.33%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            +K V +GD  VGK++++ RF  ++F+   ++TIG++F ++ + L+++ ++ Q+WDTAGQER+R++  +Y R             + SF N  +W+ E+R    S+++I+LVGNKTDL+  R VS EE +A + E N+ FIETSA    N++  F+ +
Sbjct:   11 FKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTV 167          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.151e-29
Identity = 60/157 (38.22%), Postives = 102/157 (64.97%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            +K+V +GD  VGK++I++RF  ++F    ++TIG++F ++T+ +E +TV+ Q+WDTAGQER+R++  +Y R             RQ+F N  +W+ E+R    S+++I++ GNK+DL   R VS E+G+A + +  + F+ETSA    NI+  F+ I
Sbjct:   13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTI 169          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.151e-29
Identity = 62/158 (39.24%), Postives = 95/158 (60.13%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            +KL+ +GD  VGKT +I RF  D F++TY +TIGIDF  +T+ +E + ++LQ+WDTAGQERF+++  +Y R              +SF N   W+  ++    + V  +L+GNK D+  KR+V  E+ E  +RE  + F ETSAK+  N+   F  +A
Sbjct:    9 FKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLA 166          
The following BLAST results are available for this feature:
BLAST of FC920882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB13_MOUSE1.414e-2939.87Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB10_DISOM1.414e-2942.41Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
YPT5_SCHPO1.847e-2941.72GTP-binding protein ypt5 OS=Schizosaccharomyces po... [more]
RAB13_MESAU1.847e-2939.24Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB13_HUMAN1.847e-2939.24Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_BOVIN1.847e-2939.24Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB10_CHICK2.413e-2941.77Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
YPT3_SCHPO3.151e-2937.58GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RB2BV_BETVU3.151e-2938.22Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAB13_RAT3.151e-2939.24Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC32014C04EF RVDevelop1 Citrus clementina cDNA clone C32014C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920882 ID=FC920882; Name=FC920882; organism=Citrus clementina; type=EST; length=712bp
ACACTGAACAGAGTCCTGGCTTTACTAAAATTGCTTCAGCTTATTAAACA
AATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAAA
ATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAGA
TCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAAT
TCGATAACACCTATCAGGCTACAATTGGTATTGACTTCCTTTCAAAAACT
ATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTGG
ACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCTG
TTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACACT
TCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCAT
TGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCCA
TAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGAA
ACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTGC
TGCAGCATTGCCAGGGATGGAAACACTTTCTTCACAAAGCAAGAAGAAAT
GGTTGACGTGAATCTGAGGTCTACAACTGGCAATGCATCACAGTCCCAGT
CTCAGTCAAGTG
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