FC920882

Overview
NameFC920882
Unique NameFC920882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.151e-29
Identity = 66/158 (41.77%), Postives = 94/158 (59.49%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  KT+ L+ + ++LQ+WDTAGQERF ++  SY R              +SF N SKW+  +      DV  +L+GNK D+ +KR V   +GE  +RE  + F ETSAK   NI+  F  +A
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLA 167          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.116e-29
Identity = 64/158 (40.51%), Postives = 94/158 (59.49%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            +KL+ +GD  VGKT  + RF  D F+ T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y R              +SF N   W+  +      DV  +++GNK D  +KRQVS E+GE  +    + F+ETSAKA  NI+  F  +A
Sbjct:    9 FKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLA 166          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.375e-29
Identity = 59/157 (37.58%), Postives = 95/157 (60.51%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQER+R++  +Y R             ++SF     W  +++T    +  ++LVGNK DL ++R VS E+G+  + +L   F E SAK   N+K +F ++
Sbjct:   23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVFERL 179          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.020e-29
Identity = 59/157 (37.58%), Postives = 101/157 (64.33%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            +K+V +GD  VGK++I++RF  ++F    ++TIG++F ++T+ +E +TV+ Q+WDTAGQER+R++  +Y R             RQ+F N  +W+ E+R  R S+++I+L GNK+DL   R VS ++ +A  ++  + F+ETSA    N+   F+ I
Sbjct:   13 FKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTI 169          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB4_DICDI (Ras-related protein Rab-4 OS=Dictyostelium discoideum GN=rab4 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.020e-29
Identity = 61/155 (39.35%), Postives = 99/155 (63.87%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRK 595
            K + +G QSVGK+ ++ RF+ +KF +    TIG+DF S+ + ++ + V+LQ+WDTAGQERFRS++ SY R             R+S+ + + W+ +V++    DV I+LVGNK DL E+R+V+  E    ++E  ++F+ETSA  G  ++ +F K
Sbjct:    9 KFIIIGSQSVGKSCLLFRFIDNKFKSQSTHTIGVDFSSRVVDIQGKNVKLQIWDTAGQERFRSVVISYYRGSAGVALVYDVTNRESYNHITNWLSDVKSLASPDVTIILVGNKADLTEQREVTFLEASRIAQENGLLFMETSALTGEGVEEMFLK 163          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.020e-29
Identity = 60/157 (38.22%), Postives = 96/157 (61.15%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 598
            +KL+ +G+ SVGKTS + R+  D F + + +T+GIDF  KT++  D+ V+LQ+WDTAGQER+R++  +Y R              +SF +   W  +++T    +  +VLVGNK D+  +R VS++ G   + +L + F ETSAK   N+K +F K+
Sbjct:   23 FKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKL 179          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.168e-29
Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALP 613
            KLV LGD   GK+S++ RF+  +F    ++TIG  F S T+ + + TV+ ++WDTAGQER+ SL P Y R               SF    KW+ E++ +   ++++ L GNK DL ++R+V+ EE    + E  + F+ETSAK   N+  +F +IA  LP
Sbjct:   12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLP 172          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 9.168e-29
Identity = 63/170 (37.06%), Postives = 103/170 (60.59%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSQ 637
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+  + +T++LQ+WDTAGQERFR++  SY R              +SF N  +W+ E+      +V  +LVGNK+DL E R +  E  +A + E+ + F+ETSAK   N++  F  ++A++   E ++SQ
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASI--KERMASQ 176          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.197e-28
Identity = 62/157 (39.49%), Postives = 92/157 (58.60%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            KL+ +GD  VGK+ ++ RF  D F  ++  TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y R             ++SF N   W   V      +V  +L+GNK D  ++RQVS E+G+A + EL V F+E SAK   N+   F  +A
Sbjct:   11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLA 167          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.197e-28
Identity = 62/161 (38.51%), Postives = 98/161 (60.87%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK+DL  KR VS +  +  +  L + F+ETSAK   N++  F  +AA +
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQI 169          
The following BLAST results are available for this feature:
BLAST of FC920882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB10_CANFA3.151e-2941.77Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RAB8A_CHICK4.116e-2940.51Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB3D_RAT5.375e-2937.58GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RB11A_TOBAC7.020e-2937.58Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RAB4_DICDI7.020e-2939.35Ras-related protein Rab-4 OS=Dictyostelium discoid... [more]
RAB3_CAEEL7.020e-2938.22Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RHN1_NICPL9.168e-2937.89Ras-related protein RHN1 OS=Nicotiana plumbaginifo... [more]
RBD2A_ARATH9.168e-2937.06Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
YPT2_SCHPO1.197e-2839.49GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
YPT1_PHYIN1.197e-2838.51Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]

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Properties
Property NameValue
Genbank descriptionC32014C04EF RVDevelop1 Citrus clementina cDNA clone C32014C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920882 ID=FC920882; Name=FC920882; organism=Citrus clementina; type=EST; length=712bp
ACACTGAACAGAGTCCTGGCTTTACTAAAATTGCTTCAGCTTATTAAACA
AATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAAA
ATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAGA
TCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAAT
TCGATAACACCTATCAGGCTACAATTGGTATTGACTTCCTTTCAAAAACT
ATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTGG
ACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCTG
TTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACACT
TCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCAT
TGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCCA
TAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGAA
ACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTGC
TGCAGCATTGCCAGGGATGGAAACACTTTCTTCACAAAGCAAGAAGAAAT
GGTTGACGTGAATCTGAGGTCTACAACTGGCAATGCATCACAGTCCCAGT
CTCAGTCAAGTG
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