FC920882

Overview
NameFC920882
Unique NameFC920882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10292 contig Ccv1_Contig10292:2..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28
Identity = 60/161 (37.27%), Postives = 98/161 (60.87%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ + ++LQ+WDTAGQERFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK+DL  K+ V  +  +A + E+ + F+ETSAK   N++  F  +AA +
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28
Identity = 62/157 (39.49%), Postives = 97/157 (61.78%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 601
            K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQERFR++  +Y R              ++F N  +W   V      +  ++LVGNK+D+ E R V+ ++GEA ++EL + FIE+SAK   N+  +F  +A
Sbjct:   22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 177          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQERFRS+  SY R              +SF    +W+ E+     + VI VLVGNK DL E+R+VS +  E  S   ++ ++ETSAK   N++ LF  +A  L
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQERFRS+  SY R              +SF    +W+ E+     + VI VLVGNK DL E+R+VS +  E  S   ++ ++ETSAK   N++ LF  +A  L
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQERFRS+  SY R              +SF    +W+ E+     + VI VLVGNK DL E+R+VS +  E  S   ++ ++ETSAK   N++ LF  +A  L
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 170          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28
Identity = 62/196 (31.63%), Postives = 114/196 (58.16%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL-----PGMETLSSQSKKKWLT*I*GLQLAMHHSPS 700
            +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+  SY R             R +F + + W+++ R    S+++I+L+GNK+DL  +R+V  EEGEA +RE  ++F+ETSAK   N++  F   A  +      G+  +++++         G+++   HSP+
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINNEAN--------GIKIGPQHSPA 194          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28
Identity = 60/169 (35.50%), Postives = 102/169 (60.36%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI--------KPLFRKIAAAL 610
            +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+  SY R             R++F + + W+++ R    S+++I+L+GNK+DL  +R V  EEGEA +RE  ++F+ETSAK   N+        K ++RKI   L
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQGL 175          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28
Identity = 60/169 (35.50%), Postives = 102/169 (60.36%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI--------KPLFRKIAAAL 610
            +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+  SY R             R++F + + W+++ R    S+++I+L+GNK+DL  +R V  EEGEA +RE  ++F+ETSAK   N+        K ++RKI   L
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 175          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.943e-28
Identity = 65/176 (36.93%), Postives = 101/176 (57.39%), Query Frame = 2
Query:  128 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALP---GMETLSSQSKK 646
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T  LE +TV+LQ+WDTAGQERFR++  SY R             + SF N  +W+ E+       V  +LVGNK+D+V+K+ V     +  +  LN+ F+ETSAK   N++  F  ++  +    G  T +S + K
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAK 184          
BLAST of FC920882 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.943e-28
Identity = 63/160 (39.38%), Postives = 95/160 (59.38%), Query Frame = 2
Query:  131 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 610
            KL+ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  +T+  + + ++LQ+WDTAGQERFR++  +Y R              +SF N   W   V      D  I LVGNK D    RQVS E+G+  + +LNV F+E SAK+  N+  +F ++A+ +
Sbjct:   16 KLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELASII 175          
The following BLAST results are available for this feature:
BLAST of FC920882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPTV1_VOLCA4.550e-2837.27GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
SEC4_YEAST4.550e-2839.49Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
RAB30_MOUSE4.550e-2840.37Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN4.550e-2840.37Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN4.550e-2840.37Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]
RAB2_LYMST4.550e-2831.63Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2B_MOUSE4.550e-2835.50Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2B_HUMAN4.550e-2835.50Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
YPT1_SCHPO5.943e-2836.93GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
SEC4_CANAL5.943e-2839.38Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]

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Properties
Property NameValue
Genbank descriptionC32014C04EF RVDevelop1 Citrus clementina cDNA clone C32014C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920882 ID=FC920882; Name=FC920882; organism=Citrus clementina; type=EST; length=712bp
ACACTGAACAGAGTCCTGGCTTTACTAAAATTGCTTCAGCTTATTAAACA
AATCAACTCACCGTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAAA
ATGGCGCCGGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAGA
TCAATCTGTGGGCAAAACAAGTATCATCACTCGCTTCATGTATGATAAAT
TCGATAACACCTATCAGGCTACAATTGGTATTGACTTCCTTTCAAAAACT
ATGTACCTTGAAGATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTGG
ACAGGAAAGATTTAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCTG
TTGCTGTTGTTGTATATGATGTTGCAAGCCGGCAATCTTTCTTGAACACT
TCAAAATGGATTGATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCAT
TGTCCTTGTTGGGAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCCA
TAGAGGAAGGAGAAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGAA
ACGAGTGCTAAAGCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTGC
TGCAGCATTGCCAGGGATGGAAACACTTTCTTCACAAAGCAAGAAGAAAT
GGTTGACGTGAATCTGAGGTCTACAACTGGCAATGCATCACAGTCCCAGT
CTCAGTCAAGTG
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