FC920885

Overview
NameFC920885
Unique NameFC920885
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15457 contig Ccv1_Contig15457:348..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920885 vs. ExPASy Swiss-Prot
Match: SAT_ANAVT (Sulfate adenylyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=sat PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.280e-11
Identity = 53/213 (24.88%), Postives = 96/213 (45.07%), Query Frame = 2
Query:    8 LPIIRLTKIDLQWVHVLSEGWVTPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYXKADD 646
            LP ++L +  +  + +++ G  +PL+GFM + ++ + +  + +RL +G V   S+PI L++ +E    + E   V L +   + + +L   + Y++ K       + T     P V Q +   G   + GD+ +LE    H     +++ P   R  F  +    +  FQ RNP+H  H  +       +         L LHPL G  K DD
Sbjct:   35 LPRVQLDERAVSDLEMIAIGGFSPLTGFMNQEDYDRVV--SEMRLANGLV--WSIPITLSVSEEVASSLQEGGLVRLDNPAGDYIGVLQLTQKYRYDKTREAINVYRTDDAKHPGV-QVLYNQGAVNLAGDIWLLER-SSHPLFPDYQIDPVASRQMFRDKGWKTIVGFQTRNPIHRAHEYIQKCALETV-------DGLFLHPLVGATKEDD 234          
BLAST of FC920885 vs. ExPASy Swiss-Prot
Match: SAT_PORYE (Sulfate adenylyltransferase OS=Porphyra yezoensis GN=atps PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 9.508e-11
Identity = 55/215 (25.58%), Postives = 95/215 (44.19%), Query Frame = 2
Query:    8 LPIIRLTKIDLQWVHVLSEGWVTPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLL-EMGYQNPI-LLLHPLGGYXKADD 646
            LP I +   D   +H +++G ++PL+G M ++++   L    +  D G +   ++P+ L +  E+ + +      ALV    +V   L     +   K   +   +GT     P     +      L+GG + VL   +     DR  L P  +R    ++   A  AFQ RNP+H  H   +     +LL E+G  + + + L+PL G  K DD
Sbjct:   28 LPKIVVNATDYTTLHRIADGTLSPLTGPMTKADYDSVLLKKGIERD-GKLWAWTIPLSLPVTAEEAKALKAGEPAALVSESGDVFGTLTVDAAFSWDKPAFLKAVYGTERTDHPGARLWLDDPRTDLVGGSISVLAHDEARPFKDRI-LYPQSMRALLKEQGYGASVAFQTRNPLHRAHEYALVYGAEKLLKEVGDSSKVGVFLNPLVGQLKGDD 240          
The following BLAST results are available for this feature:
BLAST of FC920885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
SAT_ANAVT7.280e-1124.88Sulfate adenylyltransferase OS=Anabaena variabilis... [more]
SAT_PORYE9.508e-1125.58Sulfate adenylyltransferase OS=Porphyra yezoensis ... [more]

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Properties
Property NameValue
Genbank descriptionC32014C07EF RVDevelop1 Citrus clementina cDNA clone C32014C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920885 ID=FC920885; Name=FC920885; organism=Citrus clementina; type=EST; length=647bp
GGCGACGCTGCCGATCATCAGGCTGACGAAGATTGACCTTCAATGGGTAC
ACGTGTTGAGCGAGGGTTGGGTCACCCCTCTAAGCGGGTTCATGAGAGAA
TCCGAGTTCCTCCAAACTCTTCATTTCAACTCGCTCCGTCTGGACGACGG
GTCGGTTGTTAACATGTCCGTGCCGATCGTCTTGGCGATCGACGACGAGC
AGAAGCGTCGGATTGGTGAGTCGACGCGTGTCGCTCTCGTTGACTCCGAT
GACAACGTCGTTGCGATTTTGAACGACATTGAGATCTACAAGCACCCCAA
AGAAGAAAGGATAGCCCGAACATGGGGGACAACTGCCCCTGGTCTACCTT
ATGTTGACCAGGCCATAACTTATGCTGGAAATTGGCTGATTGGAGGTGAC
TTGGAGGTGCTAGAACCAATCAAGTACCACGATGGTCTTGATCGTTTCCG
ATTGTCACCTGCTCAACTTCGTGATGAATTCAGCAAGCGCAATGCCGATG
CTGTGTTTGCTTTCCAGCTTAGGAATCCTGTGCACAATGGTCATGCTCTA
TTGATGACTGATACCCGTCGTAGGCTTCTTGAGATGGGTTACCAGAATCC
TATCCTCTTGCTACACCCATTAGGAGGCTATANCAAGGCAGATGATG
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