FC920886

Overview
NameFC920886
Unique NameFC920886
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PERN_ARMRU (Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.972e-14
Identity = 41/114 (35.96%), Postives = 69/114 (60.53%), Query Frame = 2
Query:  263 MVLILWGSCCLFAGGNGVLVLHFYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTETLSDKNF-GIRKVDIINEIKSSLETLCPETVSC 601
            ++L ++  C L +     L    Y KSCP+    V++++K  + ++I  AA+++RL FHDC V+GCD S+LL   +G  +E L+  N   +R  ++I+ IK+++E  CP  VSC
Sbjct:   12 VLLTVFTLCMLCSAVRAQLSPDIYAKSCPNLLQIVRDQVKIALKAEIRMAASLIRLHFHDCFVNGCDASVLL---DGTNSEKLAIPNVNSVRGFEVIDTIKAAVENACPGVVSC 122          
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PERA2_ARMRU (Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.972e-14
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 2
Query:  329 FYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTETLSDKNF-GIRKVDIINEIKSSLETLCPETVSC 601
            FY  +CP+A   V+  +++   SD    A+++RL FHDC VDGCD SILL +S  I +E  +  N    R  ++++ IK++LE  CP  VSC
Sbjct:    6 FYSGTCPNASAIVRSTIQQAFQSDTRIGASLIRLHFHDCFVDGCDASILLDDSGSIQSEKNAGPNANSARGFNVVDNIKTALENTCPGVVSC 97          
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PER68_ARATH (Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.972e-14
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  329 FYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTE-TLSDKNFGIRKVDIINEIKSSLETLCPETVSC 601
            FY  SCPS    V+  ++R +  +   AA++LRL FHDC V+GCD SILL ++     E T    N  +R  ++I+ IKS +E LCP  VSC
Sbjct:   34 FYSDSCPSLLPTVRRVVQREVAKERRIAASLLRLFFHDCFVNGCDASILLDDTRSFLGEKTAGPNNNSVRGYEVIDAIKSRVERLCPGVVSC 125          
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PER53_ARATH (Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.972e-14
Identity = 41/120 (34.17%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  245 GLRELTMVLILWGSCCLFAGGNGVLVLHFYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTETLSDKNF-GIRKVDIINEIKSSLETLCPETVSC 601
            GL  +++++I+     +F   +  L   FY  +CP+A   V+  +++ + SD    A+++RL FHDC V+GCD SILL ++  I +E  +  N    R  ++++ IK++LE  CP  VSC
Sbjct:   11 GLFIISLIVIV---SSIFGTSSAQLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSIQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSC 127          
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PER1B_ARMRU (Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.972e-14
Identity = 46/117 (39.32%), Postives = 63/117 (53.85%), Query Frame = 2
Query:  260 TMVLILWGSCCLFAG-GNGVLVLHFYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTE--TLSDKNFGIRKVDIINEIKSSLETLCPETVSC 601
            T +LI  G    +A   +  L   FY  SCP+    V++ +   + SD    A+ILRL FHDC V+GCD SILL N+    TE   L + N   R    ++ IK+++E  CP TVSC
Sbjct:   10 TWILITLGCLAFYASLSDAQLTPTFYDTSCPNVSNIVRDIIINELRSDPRITASILRLHFHDCFVNGCDASILLDNTTSFLTEKDALGNAN-SARGFPTVDRIKAAVERACPRTVSC 125          
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PER54_ARATH (Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.041e-13
Identity = 38/104 (36.54%), Postives = 62/104 (59.62%), Query Frame = 2
Query:  293 LFAGGNGVLVLHFYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTETLSDKNF-GIRKVDIINEIKSSLETLCPETVSC 601
            LF   +  L   FY  +CP+A   V+  +++ + SD     +++RL FHDC V+GCDGS+LL +++ I +E  +  N    R  ++++ IK++LE  CP  VSC
Sbjct:   25 LFGTSSAQLNATFYSGTCPNASAIVRSTIQQALQSDARIGGSLIRLHFHDCFVNGCDGSLLLDDTSSIQSEKNAPANANSTRGFNVVDSIKTALENACPGIVSC 128          
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PER71_ARATH (Peroxidase 71 OS=Arabidopsis thaliana GN=PER71 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.360e-13
Identity = 38/91 (41.76%), Postives = 51/91 (56.04%), Query Frame = 2
Query:  329 FYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTETLSDKNFGIRKVDIINEIKSSLETLCPETVSC 601
            FY  +CP AE  V+  +     SD   A  ILR+ FHDC V GCDGSIL+  +N   TE  +  N  ++  ++I+  K+ LE  CP  VSC
Sbjct:   39 FYLTTCPRAETIVRNAVNAGFSSDPRIAPGILRMHFHDCFVQGCDGSILISGAN---TERTAGPNLNLQGFEVIDNAKTQLEAACPGVVSC 126          
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PER38_ARATH (Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.360e-13
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  329 FYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTETLSDKNF-GIRKVDIINEIKSSLETLCPETVSC 601
            FY K+CP     V   +   + SD   AA+ILRL FHDC V+GCD SILL N+    TE  +  N    R  D+I+++K+++E  CP TVSC
Sbjct:   28 FYDKTCPQVFDIVTNTIVNALRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFDVIDKMKAAIEKACPRTVSC 119          
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PER33_ARATH (Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.360e-13
Identity = 47/115 (40.87%), Postives = 63/115 (54.78%), Query Frame = 2
Query:  266 VLILWGSCCLFAG-GNGVLVLHFYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTE--TLSDKNFGIRKVDIINEIKSSLETLCPETVSC 601
            VLI  G   L A   +  L   FY  SCP+    V++ +   + SD   A +ILRL FHDC V+GCD SILL N+    TE   L + N   R   +I+ +K+++E  CP TVSC
Sbjct:   15 VLITVGCLMLCASFSDAQLTPTFYDTSCPTVTNIVRDTIVNELRSDPRIAGSILRLHFHDCFVNGCDASILLDNTTSFRTEKDALGNAN-SARGFPVIDRMKAAVERACPRTVSC 128          
BLAST of FC920886 vs. ExPASy Swiss-Prot
Match: PER2_ARMRU (Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.360e-13
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  329 FYKKSCPSAEMPVKEEMKRNMLSDISSAAAILRLDFHDCQVDGCDGSILLGNSNGITTETLSDKNF-GIRKVDIINEIKSSLETLCPETVSC 601
            FY K+CP         +K  + SD   AA+ILRL FHDC V+GCD SILL N+    TE  +  N    R  D+I+ +K+++E  CP+TVSC
Sbjct:   30 FYDKTCPQVFDIATNTIKTALRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNARSARGFDVIDTMKAAVEKACPKTVSC 121          
The following BLAST results are available for this feature:
BLAST of FC920886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
PERN_ARMRU7.972e-1435.96Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 S... [more]
PERA2_ARMRU7.972e-1441.30Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1... [more]
PER68_ARATH7.972e-1443.48Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=... [more]
PER53_ARATH7.972e-1434.17Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=... [more]
PER1B_ARMRU7.972e-1439.32Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE... [more]
PER54_ARATH1.041e-1336.54Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=... [more]
PER71_ARATH1.360e-1341.76Peroxidase 71 OS=Arabidopsis thaliana GN=PER71 PE=... [more]
PER38_ARATH1.360e-1344.57Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=... [more]
PER33_ARATH1.360e-1340.87Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=... [more]
PER2_ARMRU1.360e-1344.57Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC32014C08EF RVDevelop1 Citrus clementina cDNA clone C32014C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920886 ID=FC920886; Name=FC920886; organism=Citrus clementina; type=EST; length=602bp
TTTTAACAGTTTCAATTACTCAGAAGAAGAAACTTACCCTTACTAGCCAA
CAACGTTTTCCAATTTTCCGATGCAACATTCCCACCAACATTCAACTTCA
CGCTCATTAAATGTCATTAGATTCCTGAACTATGAAACAAGTCCATTATT
TAAATGAACTTGGCATTCCCATGTGATAAAAATTTACTTAAAAAACAAAA
ATTTTCTCCTTATAATTCTTTGTGATTTTTGAAAAATGAAAATGGGATTA
AGAGAATTGACAATGGTGTTGATTTTGTGGGGTTCTTGCTGCTTGTTTGC
AGGTGGAAATGGGGTACTTGTGCTTCACTTTTATAAAAAGAGTTGCCCTA
GTGCAGAAATGCCAGTAAAAGAGGAGATGAAAAGAAATATGCTGAGTGAT
ATTTCTTCTGCTGCTGCCATTCTTAGACTGGATTTTCATGATTGTCAAGT
CGATGGTTGTGATGGATCAATTCTTCTCGGAAACTCAAACGGGATTACAA
CAGAAACATTATCGGACAAGAATTTCGGAATCCGGAAGGTTGATATTATC
AATGAGATAAAGAGTTCCCTTGAAACGCTTTGTCCTGAAACAGTTTCTTG
TG
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