FC920893

Overview
NameFC920893
Unique NameFC920893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14210 contig Ccv1_Contig14210:1..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_PYRKO (Flap structure-specific endonuclease OS=Pyrococcus kodakaraensis GN=fen PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.826e-40
Identity = 82/166 (49.40%), Postives = 114/166 (68.67%), Query Frame = 3
Query:  111 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            KE + ES +G+K+AIDA  ++YQFL  + +     L +  G +TSHL G F RTI L+EAG+KP YVFDG+PPD KK+EL KR   R +A +   EA+E G+ E+ +K++ R  +V ++  +D K+LL+LMG+PVV+APSE EAQ A +     VYA AS+D DSL
Sbjct:   12 KEIELESLYGKKVAIDAFNAMYQFLSTIRQRDGTPLMDSQGRITSHLSGFFYRTINLMEAGIKPAYVFDGKPPDFKKRELEKRREAREEAEEKWYEALEKGDLEEAKKYAMRATRVNEELINDAKKLLELMGIPVVQAPSEGEAQAAYMAAKKAVYASASQDYDSL 177          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_PYRHO (Flap structure-specific endonuclease OS=Pyrococcus horikoshii GN=fen PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.826e-40
Identity = 83/175 (47.43%), Postives = 116/175 (66.29%), Query Frame = 3
Query:   84 LADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            + D  P+  KE   E+ +G+KIAIDA  +IYQFL  + +     L +  G +TSHL G+F RTI L+EAG+KP YVFDG+PP+ K++EL KR   R +A     EA+  GN E+  K+++R  KV +   +D K+LL+LMG+P+++APSE EAQ A +   G VYA AS+D DSL
Sbjct:    5 IGDLVPR--KEIDLENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFDGKPPEFKRKELEKRREAREEAELKWKEALAKGNLEEARKYAQRATKVNEMLIEDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASASQDYDSL 177          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_PYRAE (Flap structure-specific endonuclease OS=Pyrobaculum aerophilum GN=fen PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.609e-40
Identity = 83/184 (45.11%), Postives = 120/184 (65.22%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            MG+  L KL+     +  +E K ES  G+ IA+DA  ++YQFL  + +     L + AG +TSHL G+F RTI LLEAG++P+YVFDG+PP+ K  E+ +R   R  A +++  A++ G +ED+ K++KR V +T +  D+ KRLL  MGVP V+APSE EAQ A + + G  +AV S+D DSL
Sbjct:    1 MGVTELGKLIGK---EVRREVKLESLSGKCIALDAYNALYQFLASIRQPDGTPLMDRAGRITSHLSGLFYRTINLLEAGIRPVYVFDGKPPEFKLAEIEERRKTREKAMEEVLRAIKEGRREDVAKYAKRAVFITSEMVDEAKRLLSYMGVPWVQAPSEGEAQAAYMARKGHCWAVGSQDYDSL 181          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_PYRAB (Flap structure-specific endonuclease OS=Pyrococcus abyssi GN=fen PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.938e-40
Identity = 82/166 (49.40%), Postives = 113/166 (68.07%), Query Frame = 3
Query:  111 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            KE + E+ +G+KIAIDA  +IYQFL  + +     L +  G +TSHL G+F RTI L+EAG+KP+YVFDG+PP  KK+EL KR   R +A     EA+  G+ E+  K+++R  KV +   +D K+LL+LMG+P+V+APSE EAQ A +   G VYA AS+D DSL
Sbjct:   12 KEIELENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKPVYVFDGKPPAFKKKELEKRREAREEAEIKWKEALAKGDIEEARKYAQRATKVNEMLIEDAKKLLQLMGIPIVQAPSEGEAQAAYMAGKGDVYASASQDYDSL 177          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_THEON (Flap structure-specific endonuclease OS=Thermococcus onnurineus (strain NA1) GN=fen PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.214e-39
Identity = 80/166 (48.19%), Postives = 114/166 (68.67%), Query Frame = 3
Query:  111 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            KE + E+ +GR++AIDA  +IYQFL  + +     L +  G +TSHL G+F RTI L+EAG+KP Y+FDG+PPD KK+EL KR   R +A +   EA+E G+ E+ +K++ R  +V +   +D K LL+LMG+PV++APSE EAQ A +    +VYA AS+D DSL
Sbjct:   12 KEIELENLYGRRVAIDAFNAIYQFLSTIRQRDGTPLMDSQGRITSHLSGLFYRTINLMEAGIKPAYIFDGKPPDFKKRELEKRREAREEAEEKWYEALERGDLEEAKKYAMRATRVNEGLINDAKTLLELMGIPVIQAPSEGEAQAAYMAAKKKVYASASQDYDSL 177          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_PYRCJ (Flap structure-specific endonuclease OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=fen PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.891e-39
Identity = 81/184 (44.02%), Postives = 121/184 (65.76%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            MG+  L KL+     +A +E K ES  G+ +A+DA  ++YQFL  + +     L + AG +TSHL G+F RTI LLEAG+KP+YVFDG+PP+ K  E+ +R   +  A +++ +A+  G +ED+ K++KR + +T +  +D K+LL  MG+P V+APSE EAQ A + K G  +AV S+D DSL
Sbjct:    1 MGVTELGKLIGK---EARREIKLESLAGKCVALDAYNALYQFLASIRQPDGTPLMDRAGRITSHLSGLFYRTINLLEAGVKPVYVFDGKPPEFKLLEIEQRKKAKEKALEEVEKAIREGRREDVAKYAKRAIFLTSEMVEDAKKLLTYMGIPWVQAPSEGEAQAAHMAKRGHCWAVGSQDYDSL 181          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_PYRAR (Flap structure-specific endonuclease OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=fen PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.776e-39
Identity = 79/184 (42.93%), Postives = 122/184 (66.30%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            MG+  L KL+     +A +E K E+  GR +A+DA  ++YQFL  + +     L + AG +TSH+ G+F RTI L+EAG+KP+YVFDG+PP+ K  E+ +R   +  AT++L  A++ G ++++ K++KR + +T +  +D K+LL  MGVP V+APSE EAQ A + + G  +AV S+D DSL
Sbjct:    1 MGVTELGKLIGK---EARREVKLEALAGRCVALDAYNALYQFLASIRQPDGTPLMDRAGRITSHISGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRKAKEKATEELVRAIKEGRRDEVAKYAKRAIFLTNEMVEDAKKLLTYMGVPWVQAPSEGEAQAAYMARRGHCWAVGSQDYDSL 181          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_PYRIL (Flap structure-specific endonuclease OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=fen PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.874e-38
Identity = 82/184 (44.57%), Postives = 118/184 (64.13%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            MG+  L KL+  +     +E K E+  G+ IA+DA  S+YQFL  + +     L +  G +TSHL G+F RTI L+EAG+KP+YVFDG+PP+ K  E+ +R   +  A +++ +A++ G KED+ K+ KR V +T    +D K+LL  MGVP V+APSE EAQ A + K G  +AV S+D DSL
Sbjct:    1 MGVTELGKLIGKDI---RREVKLENLAGKCIALDAYNSLYQFLASIRQPDGTPLMDRVGRITSHLSGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRKVKEKAMEEVLKAIKEGRKEDVAKYMKRAVFLTSDMVEDAKKLLTYMGVPWVQAPSEGEAQAAHMAKRGHCWAVGSQDYDSL 181          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_THEGJ (Flap structure-specific endonuclease OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=fen PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.448e-38
Identity = 81/166 (48.80%), Postives = 111/166 (66.87%), Query Frame = 3
Query:  111 KEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            KE + E+ +G+K+AIDA  ++YQFL  + +     L +  G +TSHL G F RTI L+EAG+KP YVFDG+PP  KK+EL KR   R +A +   EA+E G  E+ +K++ R  K+ +   +D K+LL LMGVPVV+APSE EAQ A +    +VYA AS+D DSL
Sbjct:   12 KEIELENLYGKKVAIDAFNAMYQFLSTIRQRDGTPLMDSKGRITSHLSGFFYRTINLMEAGIKPAYVFDGEPPAFKKKELEKRREAREEAEEKWHEALERGEIEEAKKYAMRATKLNETLIEDAKKLLGLMGVPVVQAPSEGEAQAAYMAAKKRVYASASQDYDSL 177          
BLAST of FC920893 vs. ExPASy Swiss-Prot
Match: FEN_THENV (Flap structure-specific endonuclease OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=fen PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.197e-38
Identity = 82/184 (44.57%), Postives = 118/184 (64.13%), Query Frame = 3
Query:   57 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 608
            MG+  L KL+     +A +E K E+  GR IA+DA  ++YQFL  + +     L +  G VTSHL G+F RTI L+EAG+KP+YVFDG+PP+ K  E+  R   +  A +++ +A+  G ++D+ K+ KR + +T +  +D KRLL  MGVP V+APSE EAQ A + K G  +AV S+D DSL
Sbjct:    1 MGVTELGKLIGR---EARREIKLENLAGRCIALDAYNALYQFLASIRQPDGTPLMDRQGRVTSHLSGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEARRRVKEKAMEEVVKAIREGKRDDVAKYMKRVIFLTNEMVEDAKRLLTYMGVPWVQAPSEGEAQAAHMAKRGHCWAVGSQDYDSL 181          
The following BLAST results are available for this feature:
BLAST of FC920893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
FEN_PYRKO5.826e-4049.40Flap structure-specific endonuclease OS=Pyrococcus... [more]
FEN_PYRHO5.826e-4047.43Flap structure-specific endonuclease OS=Pyrococcus... [more]
FEN_PYRAE7.609e-4045.11Flap structure-specific endonuclease OS=Pyrobaculu... [more]
FEN_PYRAB9.938e-4049.40Flap structure-specific endonuclease OS=Pyrococcus... [more]
FEN_THEON2.214e-3948.19Flap structure-specific endonuclease OS=Thermococc... [more]
FEN_PYRCJ2.891e-3944.02Flap structure-specific endonuclease OS=Pyrobaculu... [more]
FEN_PYRAR3.776e-3942.93Flap structure-specific endonuclease OS=Pyrobaculu... [more]
FEN_PYRIL1.874e-3844.57Flap structure-specific endonuclease OS=Pyrobaculu... [more]
FEN_THEGJ2.448e-3848.80Flap structure-specific endonuclease OS=Thermococc... [more]
FEN_THENV3.197e-3844.57Flap structure-specific endonuclease OS=Thermoprot... [more]

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Properties
Property NameValue
Genbank descriptionC32014D10EF RVDevelop1 Citrus clementina cDNA clone C32014D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920893 ID=FC920893; Name=FC920893; organism=Citrus clementina; type=EST; length=654bp
TCTCCACATAAACCCTAAACAGAAAGCTTCGTACCCGTTCCCGTTAATTT
TATTAAATGGGTATAAAGGGTTTAACGAAGCTTCTAGCGGACAATGCACC
GAAAGCAATGAAAGAGCAGAAATTTGAGAGCTACTTCGGTCGCAAGATTG
CCATTGATGCTAGCATGAGCATTTACCAGTTTCTCATTGTGGTGGGCAGA
ACTGGGACTGAAATGTTGACTAATGAAGCTGGTGAAGTTACCAGTCATTT
ACAAGGCATGTTTACTCGCACAATCAGGCTCCTTGAAGCAGGAATGAAGC
CAATCTATGTTTTTGATGGGCAGCCTCCGGATTTGAAGAAACAAGAGCTG
GCCAAACGTTATTCGAAGAGGGCTGATGCTACTGATGATTTGGCTGAAGC
TGTGGAGGCTGGCAATAAGGAAGACATTGAGAAATTTAGTAAGCGAACTG
TAAAGGTGACAAAGCAGCACAATGATGACTGCAAAAGACTTCTAAAACTC
ATGGGAGTGCCTGTAGTTGAGGCTCCTTCTGAAGCAGAAGCCCAGTGTGC
TGCTCTTTGCAAATCAGGACAGGTTTATGCTGTGGCTTCTGAAGACATGG
ATTCCCTAACTTTGGTGCTCCTAGATTTCTTCGCCATTTGATGGATCCTA
GCTC
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